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Related papers: FastSAM-3DSlicer: A 3D-Slicer Extension for 3D Vol…

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Upcoming HI surveys will deliver such large datasets that automated processing using the full 3-D information to find and characterize HI objects is unavoidable. Full 3-D visualization is an essential tool for enabling qualitative and…

Instrumentation and Methods for Astrophysics · Physics 2017-06-14 J. M. van der Hulst , D. Punzo , J. B. T. M. Roerdink

Foundation models for image segmentation have shown strong generalization in natural images, yet their applicability to 3D medical imaging remains limited. In this work, we study the zero-shot use of Segment Anything Model 2 (SAM2) for…

Computer Vision and Pattern Recognition · Computer Science 2026-03-25 Miquel Lopez Escoriza , Pau Amargant Alvarez

Robot-assisted Transcranial Magnetic Stimulation (Robo-TMS) is an image-guided robotic intervention that enhances the accuracy and reproducibility of conventional Transcranial Magnetic Stimulation (TMS), a widely used non-invasive brain…

Robotics · Computer Science 2026-04-29 Wenzhi Bai , Yituo Guo , Bhaskar Basu , Andrew Weightman , Zhenhong Li

Volumetric change in glioblastoma multiforme (GBM) over time is a critical factor in treatment decisions. Typically, the tumor volume is computed on a slice-by-slice basis using MRI scans obtained at regular intervals. (3D)Slicer - a free…

Computer Vision and Pattern Recognition · Computer Science 2013-03-06 Jan Egger , Tina Kapur , Andriy Fedorov , Steve Pieper , James V. Miller , Harini Veeraraghavan , Bernd Freisleben , Alexandra Golby , Christopher Nimsky , Ron Kikinis

Recent works on open-vocabulary 3D instance segmentation show strong promise, but at the cost of slow inference speed and high computation requirements. This high computation cost is typically due to their heavy reliance on 3D clip…

Computer Vision and Pattern Recognition · Computer Science 2025-02-14 Mohamed El Amine Boudjoghra , Angela Dai , Jean Lahoud , Hisham Cholakkal , Rao Muhammad Anwer , Salman Khan , Fahad Shahbaz Khan

Segment Anything Model (SAM) has emerged as a powerful tool for numerous vision applications. A key component that drives the impressive performance for zero-shot transfer and high versatility is a super large Transformer model trained on…

Computer Vision and Pattern Recognition · Computer Science 2023-12-05 Yunyang Xiong , Bala Varadarajan , Lemeng Wu , Xiaoyu Xiang , Fanyi Xiao , Chenchen Zhu , Xiaoliang Dai , Dilin Wang , Fei Sun , Forrest Iandola , Raghuraman Krishnamoorthi , Vikas Chandra

Segmentation is a fundamental problem in surgical scene analysis using artificial intelligence. However, the inherent data scarcity in this domain makes it challenging to adapt traditional segmentation techniques for this task. To tackle…

Computer Vision and Pattern Recognition · Computer Science 2023-08-08 Jay N. Paranjape , Nithin Gopalakrishnan Nair , Shameema Sikder , S. Swaroop Vedula , Vishal M. Patel

Accurate and computationally efficient 3D medical image segmentation remains a critical challenge in clinical workflows. Transformer-based architectures often demonstrate superior global contextual modeling but at the expense of excessive…

Image and Video Processing · Electrical Eng. & Systems 2026-02-19 Kavyansh Tyagi , Vishwas Rathi , Puneet Goyal

Current methods for pathology image segmentation typically treat 2D slices independently, ignoring valuable cross-slice information. We present PathSeqSAM, a novel approach that treats 2D pathology slices as sequential video frames using…

Image and Video Processing · Electrical Eng. & Systems 2025-04-16 Mingyang Zhu , Yinting Liu , Mingyu Li , Jiacheng Wang

Foundation models (FMs) such as CLIP and SAM have recently shown great promise in image segmentation tasks, yet their adaptation to 3D medical imaging-particularly for pathology detection and segmentation-remains underexplored. A critical…

Image and Video Processing · Electrical Eng. & Systems 2025-08-28 Sirui Li , Linkai Peng , Zheyuan Zhang , Gorkem Durak , Ulas Bagci

Precise image segmentation provides clinical study with instructive information. Despite the remarkable progress achieved in medical image segmentation, there is still an absence of a 3D foundation segmentation model that can segment a wide…

Computer Vision and Pattern Recognition · Computer Science 2025-02-13 Yuxin Du , Fan Bai , Tiejun Huang , Bo Zhao

Interactive segmentation allows efficient label generation by leveraging user-provided clicks to progressively refine predictions, which is critical when fully supervised labels are costly or generalization to unseen classes is needed.…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Xueyang Kang , Zijian Yu , Kourosh Khoshelham , Liangliang Nan

Brain tumor segmentation presents a formidable challenge in the field of Medical Image Segmentation. While deep-learning models have been useful, human expert segmentation remains the most accurate method. The recently released Segment…

Image and Video Processing · Electrical Eng. & Systems 2023-10-11 Mohammad Peivandi , Jason Zhang , Michael Lu , Dongxiao Zhu , Zhifeng Kou

Volumetric biomedical microscopy has the potential to increase the diagnostic information extracted from clinical tissue specimens and improve the diagnostic accuracy of both human pathologists and computational pathology models.…

Image and Video Processing · Electrical Eng. & Systems 2024-04-16 Cheng Jiang , Alexander Gedeon , Yiwei Lyu , Eric Landgraf , Yufeng Zhang , Xinhai Hou , Akhil Kondepudi , Asadur Chowdury , Honglak Lee , Todd Hollon

Foundation models for interactive segmentation in 2D natural images and videos have sparked significant interest in building 3D foundation models for medical imaging. However, the domain gaps and clinical use cases for 3D medical imaging…

Computer Vision and Pattern Recognition · Computer Science 2024-11-26 Yufan He , Pengfei Guo , Yucheng Tang , Andriy Myronenko , Vishwesh Nath , Ziyue Xu , Dong Yang , Can Zhao , Benjamin Simon , Mason Belue , Stephanie Harmon , Baris Turkbey , Daguang Xu , Wenqi Li

Foundation models such as Segment Anything Model 2 (SAM 2) exhibit strong generalization on natural images and videos but perform poorly on medical data due to differences in appearance statistics, imaging physics, and three-dimensional…

Image and Video Processing · Electrical Eng. & Systems 2026-01-21 Satrajit Chakrabarty , Sourya Sengupta , Gopal Avinash , Ravi Soni

The sharp rise in medical tomography examinations has created a demand for automated systems that can reliably extract informative features for downstream tasks such as tumor characterization. Although 3D volumes contain richer information…

Image and Video Processing · Electrical Eng. & Systems 2025-12-17 Johannes Kiechle , Stefan M. Fischer , Daniel M. Lang , Cosmin I. Bercea , Matthew J. Nyflot , Lina Felsner , Julia A. Schnabel , Jan C. Peeken

In medical image segmentation, heterogeneous privacy policies across institutions often make joint training on pooled datasets infeasible, motivating continual image segmentation-learning from data streams without catastrophic forgetting.…

Computer Vision and Pattern Recognition · Computer Science 2025-11-24 Jiayi Wang , Wei Dai , Haoyu Wang , Sihan Yang , Haixia Bi , Jian Sun

We have witnessed remarkable progress in foundation models in vision tasks. Currently, several recent works have utilized the segmenting anything model (SAM) to boost the segmentation performance in medical images, where most of them focus…

Computer Vision and Pattern Recognition · Computer Science 2025-03-07 Haoran Wang , Lian Huai , Wenbin Li , Lei Qi , Xingqun Jiang , Yinghuan Shi

Segment Anything Model (SAM), a prompt-driven foundation model for natural image segmentation, has demonstrated impressive zero-shot performance. However, SAM does not work when directly applied to medical image segmentation, since SAM…

Computer Vision and Pattern Recognition · Computer Science 2025-03-25 Bin Xie , Hao Tang , Bin Duan , Dawen Cai , Yan Yan , Gady Agam
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