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Domains like bioinformatics, version control systems, collaborative editing systems (wiki), and others, are producing huge data collections that are very repetitive. That is, there are few differences between the elements of the collection.…

Data Structures and Algorithms · Computer Science 2011-12-21 Sebastian Kreft , Gonzalo Navarro

A compressed full-text self-index represents a text in a compressed form and still answers queries efficiently. This technology represents a breakthrough over the text indexing techniques of the previous decade, whose indexes required…

Data Structures and Algorithms · Computer Science 2007-12-21 Paolo Ferragina , Rodrigo Gonzalez , Gonzalo Navarro , Rossano Venturini

We describe the first self-indexes able to count and locate pattern occurrences in optimal time within a space bounded by the size of the most popular dictionary compressors. To achieve this result we combine several recent findings,…

Data Structures and Algorithms · Computer Science 2019-09-06 Anders Roy Christiansen , Mikko Berggren Ettienne , Tomasz Kociumaka , Gonzalo Navarro , Nicola Prezza

We study 4 problems in string matching, namely, regular expression matching, approximate regular expression matching, string edit distance, and subsequence indexing, on a standard word RAM model of computation that allows logarithmic-sized…

Data Structures and Algorithms · Computer Science 2008-09-22 Philip Bille , Martin Farach-Colton

The classic string indexing problem is to preprocess a string S into a compact data structure that supports efficient pattern matching queries. Typical queries include existential queries (decide if the pattern occurs in S), reporting…

Data Structures and Algorithms · Computer Science 2021-02-05 Philip Bille , Inge Li Gørtz , Max Rishøj Pedersen , Teresa Anna Steiner

We consider two closely related problems of text indexing in a sub-linear working space. The first problem is the Sparse Suffix Tree (SST) construction of a set of suffixes $B$ using only $O(|B|)$ words of space. The second problem is the…

Data Structures and Algorithms · Computer Science 2020-04-28 Or Birenzwige , Shay Golan , Ely Porat

The diversity across outputs generated by LLMs shapes perception of their quality and utility. High lexical diversity is often desirable, but there is no standard method to measure this property. Templated answer structures and ``canned''…

Computation and Language · Computer Science 2026-02-19 Chantal Shaib , Venkata S. Govindarajan , Joe Barrow , Jiuding Sun , Alexa F. Siu , Byron C. Wallace , Ani Nenkova

In recent years, graph theory has been widely employed to probe several language properties. More specifically, the so-called word adjacency model has been proven useful for tackling several practical problems, especially those relying on…

Computation and Language · Computer Science 2015-03-04 Diego R. Amancio

Given a string $S$ of length $n$, the classic string indexing problem is to preprocess $S$ into a compact data structure that supports efficient subsequent pattern queries. In the \emph{deterministic} variant the goal is to solve the string…

Data Structures and Algorithms · Computer Science 2016-12-07 Philip Bille , Inge Li Gørtz , Frederik Rye Skjoldjensen

We revisit various string indexing problems with range reporting features, namely, position-restricted substring searching, indexing substrings with gaps, and indexing substrings with intervals. We obtain the following main results.…

Data Structures and Algorithms · Computer Science 2011-08-19 Philip Bille , Inge Li Goertz

Two decades ago, a breakthrough in indexing string collections made it possible to represent them within their compressed space while at the same time offering indexed search functionalities. As this new technology permeated through…

Data Structures and Algorithms · Computer Science 2022-11-28 Gonzalo Navarro

Suppose that we are given a string $s$ of length $n$ over an alphabet $\{0,1,\ldots,n^{O(1)}\}$ and $\delta$ is the string complexity of $s$, a known compression measure. We describe an index on $s$ with $O(\delta\log\frac{n}{\delta})$…

Data Structures and Algorithms · Computer Science 2026-04-15 Dmitry Kosolobov

It has been shown in the indexing literature that there is an essential difference between prefix/range searches on the one hand, and predecessor/rank searches on the other hand, in that the former provably allows faster query resolution.…

Data Structures and Algorithms · Computer Science 2018-04-16 Djamal Belazzougui , Paolo Boldi , Rasmus Pagh , Sebastiano Vigna

Text indexing, the problem in which one desires to preprocess a (usually large) text for future (shorter) queries, has been researched ever since the suffix tree was invented in the early 70's. With textual data continuing to increase and…

Data Structures and Algorithms · Computer Science 2017-01-08 Moshe Lewenstein

The proliferation of Large Language Models (LLMs) necessitates efficient mechanisms to distinguish machine-generated content from human text. While statistical watermarking has emerged as a promising solution, existing methods suffer from…

Machine Learning · Computer Science 2026-02-20 Baihe Huang , Eric Xu , Kannan Ramchandran , Jiantao Jiao , Michael I. Jordan

The impact of text length on the estimation of lexical diversity has captured the attention of the scientific community for more than a century. Numerous indices have been proposed, and many studies have been conducted to evaluate them, but…

Computation and Language · Computer Science 2023-08-01 Yves Bestgen

We consider document listing on string collections, that is, finding in which strings a given pattern appears. In particular, we focus on repetitive collections: a collection of size $N$ over alphabet $[1,\sigma]$ is composed of $D$ copies…

Data Structures and Algorithms · Computer Science 2018-11-15 Gonzalo Navarro

Full-text search engines are important tools for information retrieval. Term proximity is an important factor in relevance score measurement. In a proximity full-text search, we assume that a relevant document contains query terms near each…

Information Retrieval · Computer Science 2018-11-20 Alexander B. Veretennikov

In this paper we study the fundamental problem of maintaining a dynamic collection of strings under the following operations: concat - concatenates two strings, split - splits a string into two at a given position, compare - finds the…

Data Structures and Algorithms · Computer Science 2016-04-11 Paweł Gawrychowski , Adam Karczmarz , Tomasz Kociumaka , Jakub Łącki , Piotr Sankowski

The problem of storing a set of strings --- a string dictionary --- in compact form appears naturally in many cases. While classically it has represented a small part of the whole data to be processed (e.g., for Natural Language processing…

Data Structures and Algorithms · Computer Science 2011-01-31 Nieves R. Brisaboa , Rodrigo Cánovas , Miguel A. Martínez-Prieto , Gonzalo Navarro