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We explore the application of concepts developed in High Energy Physics (HEP) for advanced medical data analysis. Our study case is a problem with high social impact: clinically-feasible Magnetic Resonance Fingerprinting (MRF). MRF is a…

Magnetic Resonance Fingerprinting (MRF) is an imaging technique acquiring unique time signals for different tissues. Although the acquisition is highly accelerated, the reconstruction time remains a problem, as the state-of-the-art template…

Image and Video Processing · Electrical Eng. & Systems 2019-09-17 Elisabeth Hoppe , Florian Thamm , Gregor Körzdörfer , Christopher Syben , Franziska Schirrmacher , Mathias Nittka , Josef Pfeuffer , Heiko Meyer , Andreas Maier

Magnetic Resonance Fingerprinting (MRF) reconstructs tissue maps based on a sequence of very highly undersampled images. In order to be able to perform MRF reconstruction, state-of-the-art MRF methods rely on priors such as the MR physics…

Image and Video Processing · Electrical Eng. & Systems 2020-10-20 Simon Arberet , Xiao Chen , Boris Mailhe , Peter Speier , Gregor Koerzdoerfer , Mathias Nittka , Heiko Meyer , Mariappan S. Nadar

We developed a new magnetic resonance imaging method called multinuclear fingerprinting (MNF) which leverages simultaneously-acquired proton (1H) and sodium (23Na) data to generate seven quantitative maps of the whole brain: proton density…

Medical Physics · Physics 2026-05-25 Gonzalo G. Rodriguez , Zidan Yu , Lauren O'Donnell , Martijn A. Cloos , Guillaume Madelin

MR fingerprinting (MRF) is a rapid growing approach for fast quantitave MRI. A typical drawback of dictionary-based MRF is its explosion in size as a function of the number of reconstructed parameters, according to the curse of…

Magnetic resonance fingerprinting (MRF) is a new technique for simultaneously quantifying multiple MR parameters using one temporally resolved MR scan. But its brute-force dictionary generating and searching (DGS) process causes a huge disk…

Data Structures and Algorithms · Computer Science 2017-10-31 Ze Wang

Magnetic resonance fingerprinting (MRF) enables fast and multiparametric MR imaging. Despite fast acquisition, the state-of-the-art reconstruction of MRF based on dictionary matching is slow and lacks scalability. To overcome these…

Image and Video Processing · Electrical Eng. & Systems 2021-03-11 Fabian Balsiger , Alain Jungo , Olivier Scheidegger , Benjamin Marty , Mauricio Reyes

We developed a new sodium magnetic resonance fingerprinting ($^\text{23}\text{Na}$ MRF) method for the simultaneous mapping of $\text{T}_\text{1}$, $\text{T}_\text{2,long}^{*}$, $\text{T}_\text{2,short}^{*}$ and sodium density with built-in…

Magnetic Resonance Fingerprinting (MRF) methods typically rely on dictionary matching to map the temporal MRF signals to quantitative tissue parameters. These methods suffer from heavy storage and computation requirements as the dictionary…

Image and Video Processing · Electrical Eng. & Systems 2019-11-25 Dongdong Chen , Mohammad Golbabaee , Pedro A. Gomez , Marion I. Menzel , Mike E. Davies

Magnetic resonance fingerprinting (MRF) can successfully recover quantitative multi-parametric maps of human tissue in a very short acquisition time. Due to their pseudo-random nature, the large spatial undersampling artifacts can be…

Magnetic Resonance Fingerprinting (MRF) is a time-efficient approach to quantitative MRI, enabling the mapping of multiple tissue properties from a single, accelerated scan. However, achieving accurate reconstructions remains challenging,…

Image and Video Processing · Electrical Eng. & Systems 2024-12-19 Perla Mayo , Carolin M. Pirkl , Alin Achim , Bjoern H. Menze , Mohammad Golbabaee

Recovering the T2 distribution from multi-echo T2 magnetic resonance (MR) signals is challenging but has high potential as it provides biomarkers characterizing the tissue micro-structure, such as the myelin water fraction (MWF). In this…

Magnetic Resonance (MR) Fingerprinting is an emerging multi-parametric quantitative MR imaging technique, for which image reconstruction methods utilizing low-rank and subspace constraints have achieved state-of-the-art performance.…

Image and Video Processing · Electrical Eng. & Systems 2023-05-26 Hengfa Lu , Huihui Ye , Lawrence L. Wald , Bo Zhao

The recently proposed Magnetic Resonance Fingerprinting (MRF) technique can simultaneously estimate multiple parameters through dictionary matching. It has promising potentials in a wide range of applications. However, MRF introduces errors…

Information Theory · Computer Science 2014-01-06 Zhe Wang , Qinwei Zhang , Jing Yuan , Xiaogang Wang

Deep learning (DL) has recently emerged to address the heavy storage and computation requirements of the baseline dictionary-matching (DM) for Magnetic Resonance Fingerprinting (MRF) reconstruction. Fed with non-iterated back-projected…

Computer Vision and Pattern Recognition · Computer Science 2019-02-28 Mohammad Golbabaee , Carolin M. Pirkl , Marion I. Menzel , Guido Buonincontri , Pedro A. Gómez

The task of MRI fingerprinting is to identify tissue parameters from complex-valued MRI signals. The prevalent approach is dictionary based, where a test MRI signal is compared to stored MRI signals with known tissue parameters and the most…

Computer Vision and Pattern Recognition · Computer Science 2017-07-04 Patrick Virtue , Stella X. Yu , Michael Lustig

Magnetic resonance (MR) fingerprinting is a new quantitative imaging paradigm, which simultaneously acquires multiple MR tissue parameter maps in a single experiment. In this paper, we present an estimation-theoretic framework to perform…

Signal Processing · Electrical Eng. & Systems 2018-10-03 Bo Zhao , Justin P. Haldar , Congyu Liao , Dan Ma , Yun Jiang , Mark A. Griswold , Kawin Setsompop , Lawrence L. Wald

Accurate MR signal simulation, including microvascular structures and water diffusion, is crucial for MRI techniques like fMRI BOLD modeling and MR vascular Fingerprinting (MRF), which use susceptibility effects on MR signals for tissue…

Recent quantitative parameter mapping methods including MR fingerprinting (MRF) collect a time series of images that capture the evolution of magnetization. The focus of this work is to introduce a novel approach termed as Deep Factor…

Computer Vision and Pattern Recognition · Computer Science 2023-04-04 Yan Chen , James H. Holmes , Curtis Corum , Vincent Magnotta , Mathews Jacob

Inspired by the recently proposed Magnetic Resonance Fingerprinting (MRF) technique, we develop a principled compressed sensing framework for quantitative MRI. The three key components are: a random pulse excitation sequence following the…

Information Theory · Computer Science 2014-06-09 Mike Davies , Gilles Puy , Pierre Vandergheynst , Yves Wiaux