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Choosing an appropriate optimization algorithm is essential to achieving success in optimization challenges. Here we present a new evolutionary algorithm structure that utilizes a reinforcement learning-based agent aimed at addressing these…

Neural and Evolutionary Computing · Computer Science 2024-04-18 Farajollah Tahernezhad-Javazm , Debbie Rankin , Naomi Du Bois , Alice E. Smith , Damien Coyle

An algorithm is described that adaptively learns a non-linear mutation distribution. It works by training a denoising autoencoder (DA) online at each generation of a genetic algorithm to reconstruct a slowly decaying memory of the best…

Neural and Evolutionary Computing · Computer Science 2014-04-08 Alexander W. Churchill , Siddharth Sigtia , Chrisantha Fernando

The functions of proteins and RNAs are determined by a myriad of interactions between their constituent residues, but most quantitative models of how molecular phenotype depends on genotype must approximate this by simple additive effects.…

Quantitative Methods · Quantitative Biology 2017-12-19 Adam J. Riesselman , John B. Ingraham , Debora S. Marks

In many applications of evolutionary algorithms the computational cost of applying operators and storing populations is comparable to the cost of fitness evaluation. Furthermore, by knowing what exactly has changed in an individual by an…

Neural and Evolutionary Computing · Computer Science 2023-06-30 Maxim Buzdalov

Evolutionary Computation algorithms have been used to solve optimization problems in relation with architectural, hyper-parameter or training configuration, forging the field known today as Neural Architecture Search. These algorithms have…

Neural and Evolutionary Computing · Computer Science 2024-02-06 Javier Poyatos , Daniel Molina , Aitor Martínez , Javier Del Ser , Francisco Herrera

Agents can base decisions made using reinforcement learning (RL) on a reward function. The selection of values for the learning algorithm parameters can, nevertheless, have a substantial impact on the overall learning process. In order to…

Robotics · Computer Science 2022-11-21 Adarsh Sehgal , Nicholas Ward , Hung Manh La , Christos Papachristos , Sushil Louis

We introduce the Genetic-Gated Networks (G2Ns), simple neural networks that combine a gate vector composed of binary genetic genes in the hidden layer(s) of networks. Our method can take both advantages of gradient-free optimization and…

Neural and Evolutionary Computing · Computer Science 2019-03-06 Simyung Chang , John Yang , Jaeseok Choi , Nojun Kwak

Continuum robots enable dexterous manipulation in constrained environments, but require accurate and efficient models for real-time manipulation and control. Traditional physics-based models can be computationally expensive and may suffer…

Robotics · Computer Science 2026-05-20 Branden Frieden , James M. Ferguson , Alan Kuntz , Varun Shankar

This paper focuses on the feasibility of Deep Neural Operator (DeepONet) as a robust surrogate modeling method within the context of digital twin (DT) for nuclear energy systems. Through benchmarking and evaluation, this study showcases the…

Machine Learning · Statistics 2024-04-30 Kazuma Kobayashi , Syed Bahauddin Alam

In this paper, we present a novel approach to accelerate the Bayesian inference process, focusing specifically on the nested sampling algorithms. Bayesian inference plays a crucial role in cosmological parameter estimation, providing a…

Instrumentation and Methods for Astrophysics · Physics 2024-10-17 Isidro Gómez-Vargas , J. Alberto Vázquez

In this paper, we propose a deep evolutionary learning (DEL) process that integrates fragment-based deep generative model and multi-objective evolutionary computation for molecular design. Our approach enables (1) evolutionary operations in…

Neural and Evolutionary Computing · Computer Science 2021-02-02 Yifeng Li , Hsu Kiang Ooi , Alain Tchagang

Deep learning approaches are superior in NLP due to their ability to extract informative features and patterns from languages. The two most successful neural architectures are LSTM and transformers, used in large pretrained language models…

Computation and Language · Computer Science 2022-03-03 Matej Klemen , Luka Krsnik , Marko Robnik-Šikonja

In this paper we study the problem of learning the weights of a deep convolutional neural network. We consider a network where convolutions are carried out over non-overlapping patches with a single kernel in each layer. We develop an…

Machine Learning · Computer Science 2018-05-18 Samet Oymak , Mahdi Soltanolkotabi

Neuro-Evolution is a field of study that has recently gained significantly increased traction in the deep learning community. It combines deep neural networks and evolutionary algorithms to improve and/or automate the construction of neural…

Neural and Evolutionary Computing · Computer Science 2020-10-05 Marijn van Knippenberg , Vlado Menkovski , Sergio Consoli

Reinforcement learning (RL) applications, where an agent can simply learn optimal behaviors by interacting with the environment, are quickly gaining tremendous success in a wide variety of applications from controlling simple pendulums to…

Machine Learning · Computer Science 2022-01-28 Mariam Kiran , Melis Ozyildirim

Transformer-based models have achieved remarkable success in natural language and vision tasks, but their application to gene expression analysis remains limited due to data sparsity, high dimensionality, and missing values. We present…

Machine Learning · Computer Science 2025-04-15 Shuai Jiang , Saeed Hassanpour

In the rapidly evolving landscape of genomics, deep learning has emerged as a useful tool for tackling complex computational challenges. This review focuses on the transformative role of Large Language Models (LLMs), which are mostly based…

A deep generative model such as a GAN learns to model a rich set of semantic and physical rules about the target distribution, but up to now, it has been obscure how such rules are encoded in the network, or how a rule could be changed. In…

Computer Vision and Pattern Recognition · Computer Science 2020-07-31 David Bau , Steven Liu , Tongzhou Wang , Jun-Yan Zhu , Antonio Torralba

Proteins perform a large variety of functions in living organisms, thus playing a key role in biology. As of now, available learning algorithms to process protein data do not consider several particularities of such data and/or do not scale…

Deep learning has revolutionized the computer vision and image classification domains. In this context Convolutional Neural Networks (CNNs) based architectures are the most widely applied models. In this article, we introduced two…

Computer Vision and Pattern Recognition · Computer Science 2023-05-24 Seyedsaman Emami , Gonzalo Martínez-Muñoz