English
Related papers

Related papers: CellAgent: An LLM-driven Multi-Agent Framework for…

200 papers

Chest X-ray (CXR) plays a pivotal role in clinical diagnosis, and a variety of task-specific and foundation models have been developed for automatic CXR interpretation. However, these models often struggle to adapt to new diagnostic tasks…

Artificial Intelligence · Computer Science 2025-10-27 Jinhui Lou , Yan Yang , Zhou Yu , Zhenqi Fu , Weidong Han , Qingming Huang , Jun Yu

The rapid advancement of large language models (LLMs) has enabled the development of multi-agent systems where multiple LLM-based agents collaborate on complex tasks. However, existing systems often rely on centralized coordination, leading…

Multiagent Systems · Computer Science 2025-06-02 Yingxuan Yang , Huacan Chai , Shuai Shao , Yuanyi Song , Siyuan Qi , Renting Rui , Weinan Zhang

This paper presents a novel approach for unified retrieval-augmented generation (RAG) systems using the recent emerging large language model (LLM) agent concept. Specifically, Agent LLM, which utilizes LLM as fundamental controllers, has…

Computation and Language · Computer Science 2025-06-02 Hoang Pham , Thuy-Duong Nguyen , Khac-Hoai Nam Bui

Medical image segmentation is evolving from task-specific models toward generalizable frameworks. Recent research leverages Multi-modal Large Language Models (MLLMs) as autonomous agents, employing reinforcement learning with verifiable…

Computer Vision and Pattern Recognition · Computer Science 2026-02-04 Shengyuan Liu , Liuxin Bao , Qi Yang , Wanting Geng , Boyun Zheng , Chenxin Li , Wenting Chen , Houwen Peng , Yixuan Yuan

In the real business world, data is stored in a variety of sources, including structured relational databases, unstructured databases (e.g., NoSQL databases), or even CSV/excel files. The ability to extract reasonable insights across these…

Databases · Computer Science 2025-11-04 Han Weng , Zhou Liu , Yuanfeng Song , Xiaoming Yin , Xing Chen , Wentao Zhang

In this paper, we introduce InfiAgent-DABench, the first benchmark specifically designed to evaluate LLM-based agents on data analysis tasks. These tasks require agents to end-to-end solving complex tasks by interacting with an execution…

Computation and Language · Computer Science 2024-03-12 Xueyu Hu , Ziyu Zhao , Shuang Wei , Ziwei Chai , Qianli Ma , Guoyin Wang , Xuwu Wang , Jing Su , Jingjing Xu , Ming Zhu , Yao Cheng , Jianbo Yuan , Jiwei Li , Kun Kuang , Yang Yang , Hongxia Yang , Fei Wu

In recent years, the advances in single-cell RNA-seq techniques have enabled us to perform large-scale transcriptomic profiling at single-cell resolution in a high-throughput manner. Unsupervised learning such as data clustering has become…

Genomics · Quantitative Biology 2020-01-07 Shixiong Zhang , Xiangtao Li , Qiuzhen Lin , Ka-Chun Wong

Comparisons of single-cell RNA sequencing (scRNA-seq) data across species can reveal links between cellular gene expression and the evolution of cell functions, features, and phenotypes. These comparisons invoke evolutionary histories, as…

Populations and Evolution · Quantitative Biology 2023-07-07 Samuel H. Church , Jasmine L. Mah , Casey W. Dunn

The automation of scientific discovery represents a critical milestone in Artificial Intelligence (AI) research. However, existing agentic systems for science suffer from two fundamental limitations: rigid, pre-programmed workflows that…

Artificial Intelligence · Computer Science 2025-10-20 Ed Li , Junyu Ren , Xintian Pan , Cat Yan , Chuanhao Li , Dirk Bergemann , Zhuoran Yang

Reliability in cell type annotation is challenging in single-cell RNA-sequencing data analysis because both expert-driven and automated methods can be biased or constrained by their training data, especially for novel or rare cell types.…

Quantitative Methods · Quantitative Biology 2024-09-25 Wenjin Ye , Yuanchen Ma , Junkai Xiang , Hongjie Liang , Tao Wang , Qiuling Xiang , Andy Peng Xiang , Wu Song , Weiqiang Li , Weijun Huang

Earth observation (EO) is essential for understanding the evolving states of the Earth system. Although recent MLLMs have advanced EO research, they still lack the capability to tackle complex tasks that require multi-step reasoning and the…

Computer Vision and Pattern Recognition · Computer Science 2026-03-04 Peilin Feng , Zhutao Lv , Junyan Ye , Xiaolei Wang , Xinjie Huo , Jinhua Yu , Wanghan Xu , Wenlong Zhang , Lei Bai , Conghui He , Weijia Li

Large language models (LLMs) have demonstrated notable potential in medical applications, yet they face substantial challenges in handling complex real-world clinical diagnoses using conventional prompting methods. Current prompt…

Artificial Intelligence · Computer Science 2026-03-02 Wenliang Li , Rui Yan , Xu Zhang , Li Chen , Hongji Zhu , Jing Zhao , Junjun Li , Mengru Li , Wei Cao , Zihang Jiang , Wei Wei , Kun Zhang , Shaohua Kevin Zhou

In recent years, Large Language Models (LLMs) have demonstrated remarkable capabilities in data analytics when integrated with Multi-Agent Systems (MAS). However, these systems often struggle with complex tasks that involve diverse…

Artificial Intelligence · Computer Science 2024-12-19 Yi Huang , Fangyin Cheng , Fan Zhou , Jiahui Li , Jian Gong , Hongjun Yang , Zhidong Fan , Caigao Jiang , Siqiao Xue , Faqiang Chen

Significant progress has been made in automated problem-solving using societies of agents powered by large language models (LLMs). In finance, efforts have largely focused on single-agent systems handling specific tasks or multi-agent…

Trading and Market Microstructure · Quantitative Finance 2025-06-04 Yijia Xiao , Edward Sun , Di Luo , Wei Wang

Applications of single-cell RNA sequencing in various biomedical research areas have been blooming. This new technology provides unprecedented opportunities to study disease heterogeneity at the cellular level. However, unique…

Genomics · Quantitative Biology 2021-10-26 Xinlei Mi , William Bekerman , Peter A. Sims , Peter D. Canoll , Jianhua Hu

Large language models (LLMs) are increasingly adopted for automating survey paper generation \cite{wang2406autosurvey, liang2025surveyx, yan2025surveyforge,su2025benchmarking,wen2025interactivesurvey}. Existing approaches typically extract…

Artificial Intelligence · Computer Science 2026-02-10 Minh-Anh Nguye , Minh-Duc Nguyen , Ha Lan N. T. , Kieu Hai Dang , Nguyen Tien Dong , Dung D. Le

To fully expedite AI-powered chemical research, high-quality chemical databases are the foundation. Automatic extraction of chemical information from the literature is essential for constructing reaction databases, but it is currently…

Artificial Intelligence · Computer Science 2026-03-09 Yufan Chen , Ching Ting Leung , Bowen Yu , Jianwei Sun , Yong Huang , Linyan Li , Hao Chen , Hanyu Gao

Large language models (LLMs) show promise for healthcare question answering, but clinical use is limited by weak verification, insufficient evidence grounding, and unreliable confidence signalling. We propose a multi-agent medical QA…

Computation and Language · Computer Science 2026-02-17 Naeimeh Nourmohammadi , Md Meem Hossain , The Anh Han , Safina Showkat Ara , Zia Ush Shamszaman

Single-cell perturbation studies face dual heterogeneity bottlenecks: (i) semantic heterogeneity--identical biological concepts encoded under incompatible metadata schemas across datasets; and (ii) statistical heterogeneity--distribution…

Artificial Intelligence · Computer Science 2026-03-10 Wenxuan Huang , Mingyu Tsoi , Yanhao Huang , Xinjie Mao , Xue Xia , Hao Wu , Jiaqi Wei , Yuejin Yang , Lang Yu , Cheng Tan , Xiang Zhang , Zhangyang Gao , Siqi Sun

LLMs have achieved significant performance progress in various NLP applications. However, LLMs still struggle to meet the strict requirements for accuracy and reliability in the medical field and face many challenges in clinical…

Computation and Language · Computer Science 2024-10-11 Weixiang Yan , Haitian Liu , Tengxiao Wu , Qian Chen , Wen Wang , Haoyuan Chai , Jiayi Wang , Weishan Zhao , Yixin Zhang , Renjun Zhang , Li Zhu , Xuandong Zhao