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Large language models (LLMs) are introducing a paradigm shift in molecular discovery by enabling text-guided interaction with chemical spaces through natural language, symbolic notations, with emerging extensions to incorporate multi-modal…

Machine Learning · Computer Science 2025-05-23 Ziqing Wang , Kexin Zhang , Zihan Zhao , Yibo Wen , Abhishek Pandey , Han Liu , Kaize Ding

Cross-modal entity linking refers to the ability to align entities and their attributes across different modalities. While cross-modal entity linking is a fundamental skill needed for real-world applications such as multimodal code…

Computation and Language · Computer Science 2025-06-02 Iñigo Alonso , Gorka Azkune , Ander Salaberria , Jeremy Barnes , Oier Lopez de Lacalle

Large Language Models (LLMs) stand at the forefront of a number of Natural Language Processing (NLP) tasks. Despite the widespread adoption of LLMs in NLP, much of their potential in broader fields remains largely unexplored, and…

Machine Learning · Computer Science 2024-03-11 Zhiqiang Zhong , Kuangyu Zhou , Davide Mottin

Multimodal Large Language Models (MLLMs) have achieved remarkable progress in vision-language understanding, yet how they internally integrate visual and textual information remains poorly understood. To bridge this gap, we perform a…

Computer Vision and Pattern Recognition · Computer Science 2026-01-14 Shezheng Song , Shasha Li , Jie Yu

The remarkable success of Large Language Models (LLMs) across diverse tasks has driven the research community to extend their capabilities to molecular applications. However, most molecular LLMs employ adapter-based architectures that do…

Computation and Language · Computer Science 2025-06-24 Shuhan Guo , Yatao Bian , Ruibing Wang , Nan Yin , Zhen Wang , Quanming Yao

Large vision-language models (VLMs) achieve strong performance on multimodal tasks but often suffer from hallucination and poor grounding in knowledge-intensive reasoning. We propose SmoGVLM, a small, graph-enhanced VLM that integrates…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Debjyoti Mondal , Rituraj Singh , Subhadarshi Panda

The rapid advance of Large Language Models (LLMs) has catalyzed the development of Vision-Language Models (VLMs). Monolithic VLMs, which avoid modality-specific encoders, offer a promising alternative to the compositional ones but face the…

Computer Vision and Pattern Recognition · Computer Science 2025-02-11 Chenxin Tao , Shiqian Su , Xizhou Zhu , Chenyu Zhang , Zhe Chen , Jiawen Liu , Wenhai Wang , Lewei Lu , Gao Huang , Yu Qiao , Jifeng Dai

Vision-language models (VLMs) have achieved impressive performance across a wide range of multimodal tasks. However, they often fail on tasks that require fine-grained visual perception, even when the required information is still present…

Computer Vision and Pattern Recognition · Computer Science 2026-04-16 Haz Sameen Shahgir , Xiaofu Chen , Yu Fu , Erfan Shayegani , Nael Abu-Ghazaleh , Yova Kementchedjhieva , Yue Dong

In drug discovery, molecular optimization aims to iteratively refine a lead compound to improve molecular properties while preserving structural similarity to the original molecule. However, each oracle evaluation is expensive, making…

Machine Learning · Computer Science 2026-04-15 Ziqing Wang , Yibo Wen , Abhishek Pandy , Han Liu , Kaize Ding

Vision-language models (VLMs) like CLIP have showcased a remarkable ability to extract transferable features for downstream tasks. Nonetheless, the training process of these models is usually based on a coarse-grained contrastive loss…

Computer Vision and Pattern Recognition · Computer Science 2024-09-13 Ali Abdollah , Amirmohammad Izadi , Armin Saghafian , Reza Vahidimajd , Mohammad Mozafari , Amirreza Mirzaei , Mohammadmahdi Samiei , Mahdieh Soleymani Baghshah

Vision-Language models (VLMs) have proven to be effective at aligning image and text representations, producing superior zero-shot results when transferred to many downstream tasks. However, these representations suffer from some key…

Computer Vision and Pattern Recognition · Computer Science 2025-01-16 Nir Yellinek , Leonid Karlinsky , Raja Giryes

Language models (LMs) and their extension, vision-language models (VLMs), have achieved remarkable performance across various tasks. However, they still struggle with complex reasoning tasks that require multimodal or multilingual…

Machine Learning · Computer Science 2025-07-09 Wenyi Wu , Zixuan Song , Kun Zhou , Yifei Shao , Zhiting Hu , Biwei Huang

AI models for drug discovery and chemical literature mining must interpret molecular images and generate outputs consistent with 3D geometry and stereochemistry. Most molecular language models rely on strings or graphs, while…

Computer Vision and Pattern Recognition · Computer Science 2026-01-22 Jing Lan , Hexiao Ding , Hongzhao Chen , Yufeng Jiang , Nga-Chun Ng , Gwing Kei Yip , Gerald W. Y. Cheng , Yunlin Mao , Jing Cai , Liang-ting Lin , Jung Sun Yoo

Large Language Models (LLMs) are central to the one-for-all intelligent paradigm, but they face a fundamental challenge when dealing with heterogeneous scientific data such as molecules: the inherent gap between discrete linguistic symbols…

Artificial Intelligence · Computer Science 2026-05-22 Yuxuan Chen , Changwei Lv , Yunduo Xiao , Zhongjing Du , Daquan Zhou , Yukun Yan , Zheni Zeng , Zhiyuan Liu

Vision language models (VLM) have demonstrated remarkable performance across various downstream tasks. However, understanding fine-grained visual-linguistic concepts, such as attributes and inter-object relationships, remains a significant…

Computer Vision and Pattern Recognition · Computer Science 2024-04-02 Wujian Peng , Sicheng Xie , Zuyao You , Shiyi Lan , Zuxuan Wu

Large Vision-Language Models (VLMs) rely on effective multimodal alignment between pre-trained vision encoders and Large Language Models (LLMs) to integrate visual and textual information. This paper presents a comprehensive analysis of…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Shweta Mahajan , Hoang Le , Hyojin Park , Farzad Farhadzadeh , Munawar Hayat , Fatih Porikli

Multi-modal Large Language Models (MLLMs) have demonstrated remarkable capabilities in understanding and generating content across various modalities, such as images and text. However, their interpretability remains a challenge, hindering…

Computer Vision and Pattern Recognition · Computer Science 2024-05-29 Loris Giulivi , Giacomo Boracchi

A remarkable ability of human beings resides in compositional reasoning, i.e., the capacity to make "infinite use of finite means". However, current large vision-language foundation models (VLMs) fall short of such compositional abilities…

Computer Vision and Pattern Recognition · Computer Science 2023-11-07 Junyan Li , Delin Chen , Yining Hong , Zhenfang Chen , Peihao Chen , Yikang Shen , Chuang Gan

Although artificial intelligence (AI) has made significant progress in understanding molecules in a wide range of fields, existing models generally acquire the single cognitive ability from the single molecular modality. Since the hierarchy…

Machine Learning · Computer Science 2022-09-14 Bing Su , Dazhao Du , Zhao Yang , Yujie Zhou , Jiangmeng Li , Anyi Rao , Hao Sun , Zhiwu Lu , Ji-Rong Wen

Recent advances in visual-language machine learning models have demonstrated exceptional ability to use natural language and understand visual scenes by training on large, unstructured datasets. However, this training paradigm cannot…

Computation and Language · Computer Science 2025-08-01 Anthony C Davis , Burhan Sadiq , Tianmin Shu , Chien-Ming Huang