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Genome sequencing technology has advanced at a rapid pace and it is now possible to generate highly-detailed genotypes inexpensively. The collection and analysis of such data has the potential to support various applications, including…

Cryptography and Security · Computer Science 2015-06-18 Muhammad Naveed , Erman Ayday , Ellen W. Clayton , Jacques Fellay , Carl A. Gunter , Jean-Pierre Hubaux , Bradley A. Malin , XiaoFeng Wang

Rapid advances in human genomics are enabling researchers to gain a better understanding of the role of the genome in our health and well-being, stimulating hope for more effective and cost efficient healthcare. However, this also prompts a…

Cryptography and Security · Computer Science 2018-08-20 Alexandros Mittos , Bradley Malin , Emiliano De Cristofaro

Precision medicine is an emerging approach for disease treatment and prevention that delivers personalized care to individual patients by considering their genetic makeups, medical histories, environments, and lifestyles. Despite the rapid…

Machine Learning · Computer Science 2021-11-11 William Briguglio , Parisa Moghaddam , Waleed A. Yousef , Issa Traore , Mohammad Mamun

Artificial intelligence (AI) has been successfully applied in numerous scientific domains. In biomedicine, AI has already shown tremendous potential, e.g. in the interpretation of next-generation sequencing data and in the design of…

Privacy-preserving genomic data sharing is prominent to increase the pace of genomic research, and hence to pave the way towards personalized genomic medicine. In this paper, we introduce ($\epsilon , T$)-dependent local differential…

Cryptography and Security · Computer Science 2021-02-16 Emre Yilmaz , Tianxi Ji , Erman Ayday , Pan Li

The cost of DNA sequencing has resulted in a surge of genetic data being utilised to improve scientific research, clinical procedures, and healthcare delivery in recent years. Since the human genome can uniquely identify an individual, this…

Cryptography and Security · Computer Science 2022-02-11 Sara Jafarbeiki , Raj Gaire , Amin Sakzad , Shabnam Kasra Kermanshahi , Ron Steinfeld

Machine learning can have major societal impact in computational biology applications. In particular, it plays a central role in the development of precision medicine, whereby treatment is tailored to the clinical or genetic features of the…

Computers and Society · Computer Science 2018-09-05 Chloé-Agathe Azencott

Data-driven agriculture, which integrates technology and data into agricultural practices, has the potential to improve crop yield, disease resilience, and long-term soil health. However, privacy concerns, such as adverse pricing,…

Cryptography and Security · Computer Science 2025-06-27 Osama Zafar , Rosemarie Santa González , Mina Namazi , Alfonso Morales , Erman Ayday

Online collaborative medical prediction platforms offer convenience and real-time feedback by leveraging massive electronic health records. However, growing concerns about privacy and low prediction quality can deter patient participation…

Machine Learning · Computer Science 2025-07-16 Shao-Bo Lin , Xiaotong Liu , Yao Wang

Machine learning (ML) methods have been widely used in genomic studies. However, genomic data are often held by different stakeholders (e.g. hospitals, universities, and healthcare companies) who consider the data as sensitive information,…

Cryptography and Security · Computer Science 2020-03-03 Cheng Hong , Zhicong Huang , Wen-jie Lu , Hunter Qu , Li Ma , Morten Dahl , Jason Mancuso

The rapid advancement of large language models (LLMs) has revolutionized natural language processing, enabling applications in diverse domains such as healthcare, finance and education. However, the growing reliance on extensive data for…

Cryptography and Security · Computer Science 2024-12-10 Guoshenghui Zhao , Eric Song

Machine Learning on Big Data gets more and more attention in various fields. Even so privacy-preserving techniques become more important, even necessary due to legal regulations such as the General Data Protection Regulation (GDPR). On the…

Cryptography and Security · Computer Science 2022-01-28 Jasmin Zalonis , Frederik Armknecht , Björn Grohmann , Manuel Koch

Large genomic datasets are now created through numerous activities, including recreational genealogical investigations, biomedical research, and clinical care. At the same time, genomic data has become valuable for reuse beyond their…

Cryptography and Security · Computer Science 2021-12-28 Rajagopal Venkatesaramani , Zhiyu Wan , Bradley A. Malin , Yevgeniy Vorobeychik

Cross-institutional healthcare predictive modeling can accelerate research and facilitate quality improvement initiatives, and thus is important for national healthcare delivery priorities. For example, a model that predicts risk of…

Computers and Society · Computer Science 2018-02-07 Tsung-Ting Kuo , Lucila Ohno-Machado

The digitization of health records has greatly improved the efficiency of the healthcare system and promoted the formulation of related research and policies. However, the widespread application of advanced technologies such as electronic…

Cryptography and Security · Computer Science 2025-02-07 Zhang Si Yuan , Manmeet Mahinderjit Singh

In this paper, we attempt to provide a privacy-preserving and efficient solution for the "similar patient search" problem among several parties (e.g., hospitals) by addressing the shortcomings of previous attempts. We consider a scenario in…

Cryptography and Security · Computer Science 2020-02-04 Xiaojie Zhu , Erman Ayday , Roman Vitenberg , Narasimha Raghavan Veeraragavan

Recent advances in DNA sequencing technologies have put ubiquitous availability of fully sequenced human genomes within reach. It is no longer hard to imagine the day when everyone will have the means to obtain and store one's own DNA…

Cryptography and Security · Computer Science 2015-03-19 Pierre Baldi , Roberta Baronio , Emiliano De Cristofaro , Paolo Gasti , Gene Tsudik

Over the past several years, DNA sequencing has emerged as one of the driving forces in life-sciences, paving the way for affordable and accurate whole genome sequencing. As genomes represent the entirety of an organism's hereditary…

Cryptography and Security · Computer Science 2015-02-17 Emiliano De Cristofaro

As genomic research has grown increasingly popular in recent years, dataset sharing has remained limited due to privacy concerns. This limitation hinders the reproducibility and validation of research outcomes, both of which are essential…

Cryptography and Security · Computer Science 2025-04-02 Yuzhou Jiang , Tianxi Ji , Erman Ayday

The availability of genomic data is essential to progress in biomedical research, personalized medicine, etc. However, its extreme sensitivity makes it problematic, if not outright impossible, to publish or share it. As a result, several…

Genomics · Quantitative Biology 2022-01-19 Bristena Oprisanu , Georgi Ganev , Emiliano De Cristofaro
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