Related papers: Biomedical Nested NER with Large Language Model an…

Clinical notes contain valuable unstructured information. Named entity recognition (NER) enables the automatic extraction of medical concepts; however, benchmarks for Portuguese remain scarce. In this study, we aimed to evaluate BERT-based…

Lately, instruction-based techniques have made significant strides in improving performance in few-shot learning scenarios. They achieve this by bridging the gap between pre-trained language models and fine-tuning for specific downstream…

Automated relation extraction (RE) from biomedical literature is critical for many downstream text mining applications in both research and real-world settings. However, most existing benchmarking datasets for bio-medical RE only focus on…

This study proposes a medical entity extraction method based on Transformer to enhance the information extraction capability of medical literature. Considering the professionalism and complexity of medical texts, we compare the performance…

Spoken named entity recognition (NER) aims to identify named entities from speech, playing an important role in speech processing. New named entities appear every day, however, annotating their Spoken NER data is costly. In this paper, we…

Objective: Develop a cost-effective, large language model (LLM)-based pipeline for automatically extracting Review of Systems (ROS) entities from clinical notes. Materials and Methods: The pipeline extracts ROS section from the clinical…

In this work, we propose a two-stage method for named entity recognition (NER), especially for nested NER. We borrowed the idea from the two-stage Object Detection in computer vision and the way how they construct the loss function. First,…

Despite recent progress, Biomedical Entity Linking (BEL) with large language models (LLMs) remains computationally inefficient and challenging to deploy in practical settings. In this work, we demonstrate that instruction-tuning of…

Named entity recognition (NER) systems that perform well require task-related and manually annotated datasets. However, they are expensive to develop, and are thus limited in size. As there already exists a large number of NER datasets that…

Named Entity Recognition for social media data is challenging because of its inherent noisiness. In addition to improper grammatical structures, it contains spelling inconsistencies and numerous informal abbreviations. We propose a novel…

Recognizing spans of biomedical concepts and their types (e.g., drug or gene) in free text, often called biomedical named entity recognition (NER), is a basic component of information extraction (IE) pipelines. Without a strong NER…

Acknowledgments in scientific papers may give an insight into aspects of the scientific community, such as reward systems, collaboration patterns, and hidden research trends. The aim of the paper is to evaluate the performance of different…

Named entity recognition (NER) is a natural language processing task (NLP), which aims to identify named entities and classify them like person, location, organization, etc. In the Arabic language, we can find a considerable size of…

Named entity recognition (NER) is a fundamental task in natural language processing that involves identifying and classifying entities in sentences into pre-defined types. It plays a crucial role in various research fields, including entity…

NSURL-2019 Task 7 focuses on Named Entity Recognition (NER) in Farsi. This task was chosen to compare different approaches to find phrases that specify Named Entities in Farsi texts, and to establish a standard testbed for future researches…

The MultiCoNER II task aims to detect complex, ambiguous, and fine-grained named entities in low-context situations and noisy scenarios like the presence of spelling mistakes and typos for multiple languages. The task poses significant…

Named entity recognition (NER) is used to extract information from various documents and texts such as names and dates. It is important to extract education and work experience information from resumes in order to filter them. Considering…

Biomedical named entity recognition (NER) and entity linking (EL) strongly depend on annotated corpora, but the utility of these resources for benchmarking is often assumed rather than characterized. We present a corpus-centric framework…

The terminology used in Biomedicine shows lexical peculiarities that have required the elaboration of terminological resources and information retrieval systems with specific functionalities. The main characteristics are the high rates of…

State-of-the-art deep learning entity linking methods rely on extensive human-labelled data, which is costly to acquire. Current datasets are limited in size, leading to inadequate coverage of biomedical concepts and diminished performance…