Related papers: Hamming Distance Oracle
In this paper we consider the $p$-Norm Hamming Centroid problem which asks to determine whether some given binary strings have a centroid with a bound on the $p$-norm of its Hamming distances to the strings. Specifically, given a set of…
Let x, y be strings of equal length. The Hamming distance h(x,y) between x and y is the number of positions in which x and y differ. If x is a cyclic shift of y, we say x and y are conjugates. We consider f(x,y), the Hamming distance…
Pattern matching is a fundamental process in almost every scientific domain. The problem involves finding the positions of a given pattern (usually of short length) in a reference stream of data (usually of large length). The matching can…
Approximate string matching is the problem of finding all factors of a text t of length n that are at a distance at most k from a pattern x of length m. Approximate circular string matching is the problem of finding all factors of t that…
The decades-old Pattern Matching with Edits problem, given a length-$n$ string $T$ (the text), a length-$m$ string $P$ (the pattern), and a positive integer $k$ (the threshold), asks to list all fragments of $T$ that are at edit distance at…
This paper presents a general technique for optimally transforming any dynamic data structure that operates on atomic and indivisible keys by constant-time comparisons, into a data structure that handles unbounded-length keys whose…
There are several known data structures that answer distance queries between two arbitrary vertices in a planar graph. The tradeoff is among preprocessing time, storage space and query time. In this paper we present three data structures…
Given a set of pattern strings $\mathcal{P}=\{P_1, P_2,\ldots P_k\}$ and a text string $S$, the classic dictionary matching problem is to report all occurrences of each pattern in $S$. We study the dictionary problem in the compressed…
The string indexing problem is a fundamental computational problem with numerous applications, including information retrieval and bioinformatics. It aims to efficiently solve the pattern matching problem: given a text T of length n for…
The problem of finding a center string that is `close' to every given string arises and has many applications in computational biology and coding theory. This problem has two versions: the Closest String problem and the Closest Substring…
Suppose we are given an $n$-node, $m$-edge input graph $G$, and the goal is to compute a spanning subgraph $H$ on $O(n)$ edges. This can be achieved in linear $O(m + n)$ time via breadth-first search. But can we hope for \emph{sublinear}…
Geometric data structures have been extensively studied in the regime where the dimension is much smaller than the number of input points. But in many scenarios in Machine Learning, the dimension can be much higher than the number of points…
A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…
The Hausdorff distance is a metric commonly used to compute the set similarity of geometric sets. For sets containing a total of $n$ points, the exact distance can be computed na\"{i}vely in $O(n^2)$ time. In this paper, we show how to…
We show how to determine whether a given pattern p of length m occurs in a given text t of length n in ${\tilde O}(\sqrt{n}+\sqrt{m})$\footnote{${\tilde O}$ allows for logarithmic factors in m and $n/m$} time, with inverse polynomial…
Suppose that we are given a string $s$ of length $n$ over an alphabet $\{0,1,\ldots,n^{O(1)}\}$ and $\delta$ is the string complexity of $s$, a known compression measure. We describe an index on $s$ with $O(\delta\log\frac{n}{\delta})$…
We here study Max Hamming XSAT, ie, the problem of finding two XSAT models at maximum Hamming distance. By using a recent XSAT solver as an auxiliary function, an O(1.911^n) time algorithm can be constructed, where n is the number of…
We study bounded deviation of non-deterministic finite transducers under the Hamming distance: the bounded comparison problem asks, given two transducers and $k \in \mathbb{N}$, whether for every input the two transducers produce words at…
Let $P$ be a set of $n$ points in the plane, where each point $p\in P$ has a transmission radius $r(p)>0$. The transmission graph defined by $P$ and the given radii, denoted by $\mathcal{G}_{\mathrm{tr}}(P)$, is the directed graph whose…
We revisit the complexity of building, given a two-dimensional string of size $n$, an indexing structure that allows locating all $k$ occurrences of a two-dimensional pattern of size $m$. While a structure of size $\mathcal{O}(n)$ with…