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Generative artificial intelligence models learn probability distributions from data and produce novel samples that capture the salient properties of their training sets. Proteins are particularly attractive for such approaches given their…

Biomolecules · Quantitative Biology 2026-02-27 Filippo Stocco , Michele Garibbo , Noelia Ferruz

Semantic parsing aims to map natural language utterances onto machine interpretable meaning representations, aka programs whose execution against a real-world environment produces a denotation. Weakly-supervised semantic parsers are trained…

Computation and Language · Computer Science 2019-09-11 Bailin Wang , Ivan Titov , Mirella Lapata

Deep learning, a rebranding of deep neural network research works, has achieved a remarkable success in recent years. With multiple hidden layers, deep learning models aim at computing the hierarchical feature representations of the…

Neural and Evolutionary Computing · Computer Science 2018-06-06 Jiawei Zhang , Limeng Cui , Fisher B. Gouza

The recent series of innovations in deep learning (DL) have shown enormous potential to impact individuals and society, both positively and negatively. The DL models utilizing massive computing power and enormous datasets have significantly…

Artificial Intelligence · Computer Science 2020-12-15 Manas Gaur , Keyur Faldu , Amit Sheth

In data-rich domains such as vision, language, and speech, deep learning prevails to deliver high-performance task-specific models and can even learn general task-agnostic representations for efficient finetuning to downstream tasks.…

Machine Learning · Computer Science 2023-12-07 Pin-Yu Chen

There is growing consensus among neuroscientists that neural circuits critical for survival are the result of genomic decompression processes. We introduce SynaptoGen, a novel computational framework--member of the Connectome Models…

Neural and Evolutionary Computing · Computer Science 2025-09-09 Tommaso Boccato , Matteo Ferrante , Nicola Toschi

Manifold learning techniques play a pivotal role in machine learning by revealing lower-dimensional embeddings within high-dimensional data, thus enhancing both the efficiency and interpretability of data analysis by transforming the data…

Neural and Evolutionary Computing · Computer Science 2025-05-02 Ben Cravens , Andrew Lensen , Paula Maddigan , Bing Xue

Gene expression is a cellular process that plays a fundamental role in human phenotypical variations and diseases. Despite advances of deep learning models for gene expression prediction, recent benchmarks have revealed their inability to…

Cell Behavior · Quantitative Biology 2024-10-04 Edouardo Honig , Huixin Zhan , Ying Nian Wu , Zijun Frank Zhang

Neural network based approaches to data-to-text natural language generation (NLG) have gained popularity in recent years, with the goal of generating a natural language prompt that accurately realizes an input meaning representation. To…

Computation and Language · Computer Science 2020-11-06 Yuheng Du , Shereen Oraby , Vittorio Perera , Minmin Shen , Anjali Narayan-Chen , Tagyoung Chung , Anu Venkatesh , Dilek Hakkani-Tur

Your computer is continuously executing programs, but does it really understand them? Not in any meaningful sense. That burden falls upon human knowledge workers, who are increasingly asked to write and understand code. They deserve to have…

Artificial Intelligence · Computer Science 2019-01-28 Evan Patterson , Ioana Baldini , Aleksandra Mojsilovic , Kush R. Varshney

Although "black box" models such as Artificial Neural Networks, Support Vector Machines, and Ensemble Approaches continue to show superior performance in many disciplines, their adoption in the sensitive disciplines (e.g., finance,…

Artificial Intelligence · Computer Science 2019-05-31 Sheikh Rabiul Islam , William Eberle , Sid Bundy , Sheikh Khaled Ghafoor

Existing techniques to adapt semantic segmentation networks across the source and target domains within deep convolutional neural networks (CNNs) deal with all the samples from the two domains in a global or category-aware manner. They do…

Computer Vision and Pattern Recognition · Computer Science 2020-12-18 Minsu Kim , Sunghun Joung , Seungryong Kim , JungIn Park , Ig-Jae Kim , Kwanghoon Sohn

Semantics is a growing area of research in Genetic programming (GP) and refers to the behavioural output of a Genetic Programming individual when executed. This research expands upon the current understanding of semantics by proposing a new…

Neural and Evolutionary Computing · Computer Science 2022-06-14 Edgar Galván , Leonardo Trujillo , Fergal Stapleton

Biomarker discovery is vital in advancing personalized medicine, offering insights into disease diagnosis, prognosis, and therapeutic efficacy. Traditionally, the identification and validation of biomarkers heavily depend on extensive…

Machine Learning · Computer Science 2024-09-25 Wangyang Ying , Dongjie Wang , Xuanming Hu , Ji Qiu , Jin Park , Yanjie Fu

As artificial intelligence (AI) systems become increasingly integrated into critical decision-making processes, the need for transparent and interpretable models has become paramount. In this article we present a new ruleset creation method…

Machine Learning · Computer Science 2024-07-30 Mario Parrón Verdasco , Esteban García-Cuesta

Semantic communication is poised to play a pivotal role in shaping the landscape of future AI-driven communication systems. Its challenge of extracting semantic information from the original complex content and regenerating semantically…

Machine Learning · Computer Science 2023-09-07 Eleonora Grassucci , Yuki Mitsufuji , Ping Zhang , Danilo Comminiello

Convolutional Neural Networks (CNN) have gained great success in many artificial intelligence tasks. However, finding a good set of hyperparameters for a CNN remains a challenging task. It usually takes an expert with deep knowledge, and…

Neural and Evolutionary Computing · Computer Science 2020-06-25 Xueli Xiao , Ming Yan , Sunitha Basodi , Chunyan Ji , Yi Pan

Deep neural networks learn fragile "shortcut" features, rendering them difficult to interpret (black box) and vulnerable to adversarial attacks. This paper proposes semantic features as a general architectural solution to this problem. The…

Machine Learning · Computer Science 2024-04-18 Maciej Satkiewicz

Deep neural networks (DNNs) have been shown to outperform traditional machine learning algorithms in a broad variety of application domains due to their effectiveness in modeling complex problems and handling high-dimensional datasets. Many…

The recent efforts in automation of machine learning or data science has achieved success in various tasks such as hyper-parameter optimization or model selection. However, key areas such as utilizing domain knowledge and data semantics are…

Artificial Intelligence · Computer Science 2023-03-03 Udayan Khurana , Kavitha Srinivas , Sainyam Galhotra , Horst Samulowitz