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Graphs and networks are common ways of depicting biological information. In biology, many different biological processes are represented by graphs, such as regulatory networks, metabolic pathways and protein--protein interaction networks.…

Applications · Statistics 2010-11-16 Caiyan Li , Hongzhe Li

Algorithms for learning distributions over weight-vectors, such as AROW were recently shown empirically to achieve state-of-the-art performance at various problems, with strong theoretical guaranties. Extending these algorithms to matrix…

Machine Learning · Computer Science 2012-06-22 Koby Crammer , Gal Chechik

Locally adapted parameterizations of a model (such as locally weighted regression) are expressive but often suffer from high variance. We describe an approach for reducing the variance, based on the idea of estimating simultaneously a…

Machine Learning · Computer Science 2012-07-03 Doina Precup , Philip Bachman

In generalized regression models the effect of continuous covariates is commonly assumed to be linear. This assumption, however, may be too restrictive in applications and may lead to biased effect estimates and decreased predictive…

Methodology · Statistics 2023-11-01 Nikolai Spuck , Matthias Schmid , Moritz Berger

Understanding how deep neural networks learn representations remains a central challenge in machine learning theory. In this work, we propose a feature-centric framework for analyzing neural network training by relating weight updates to…

Machine Learning · Computer Science 2026-05-08 Taehun Cha , Daniel Beaglehole , Adityanarayanan Radhakrishnan , Donghun Lee

The factor modeling for high-dimensional time series is powerful in discovering latent common components for dimension reduction and information extraction. Most available estimation methods can be divided into two categories: the…

Methodology · Statistics 2026-05-26 Xinghao Qiao , Zihan Wang , Qiwei Yao , Bo Zhang

We present a method for learning "spectrally descriptive" edge weights for graphs. We generalize a previously known distance measure on graphs (Graph Diffusion Distance), thereby allowing it to be tuned to minimize an arbitrary loss…

Machine Learning · Computer Science 2021-07-01 Cory Braker Scott , Eric Mjolsness , Diane Oyen , Chie Kodera , David Bouchez , Magalie Uyttewaal

Multivariate spatial field data are increasingly common and whose modeling typically relies on building cross-covariance functions to describe cross-process relationships. An alternative viewpoint is to model the matrix of spectral…

Statistics Theory · Mathematics 2015-05-07 William Kleiber

The paper gives an overview of recent advances in structural equation modeling. A structural equation model is a multivariate statistical model that is determined by a mixed graph, also known as a path diagram. Our focus is on the…

Statistics Theory · Mathematics 2016-12-20 Mathias Drton

We present an edge-based framework for the study of geometric elastic network models to model mechanical interactions in physical systems. We use a formulation in the edge space, instead of the usual node-centric approach, to characterise…

Chemical Physics · Physics 2020-01-08 Maxwell Hodges , Sophia N Yaliraki , Mauricio Barahona

Many real world networks exhibit edge heterogeneity with different pairs of nodes interacting with different intensities. Further, nodes with similar attributes tend to interact more with each other. Thus, in the presence of observed node…

Methodology · Statistics 2024-12-24 Swati Chandna , Benjamin Bagozzi , Snigdhansu Chatterjee

Spatial regression is widely used for modeling the relationship between a dependent variable and explanatory covariates. Oftentimes, the linear relationships vary across space, when some covariates have location-specific effects on the…

Methodology · Statistics 2020-12-18 Xin Wang , Zhengyuan Zhu , Hao Helen Zhang

This paper addresses the problem of anomaly detection in accounting subject association structures, proposing a structured modeling and unsupervised discriminant framework based on graph neural networks. This framework is used to mine…

Machine Learning · Computer Science 2026-04-30 Yuhan Wang , Ruobing Yan , Zhe Su , Hejing Chen , Ningjing Sang , Yunfei Nie

This article presents a neural network approach for estimating the covariance function of spatial Gaussian random fields defined in a portion of the Euclidean plane. Our proposal builds upon recent contributions, expanding from the purely…

Methodology · Statistics 2024-08-21 Alejandro Villazón , Alfredo Alegría , Xavier Emery

It has been proposed that complex populations, such as those that arise in genomics studies, may exhibit dependencies among observations as well as among variables. This gives rise to the challenging problem of analyzing unreplicated…

Machine Learning · Statistics 2018-06-08 Michael Hornstein , Roger Fan , Kerby Shedden , Shuheng Zhou

We present the first empirical evaluation of techniques for encoding distributions of quantitative edge values within adjacency matrices. In many real-world networks, edges represent not a single value but a set of measurements. While…

Human-Computer Interaction · Computer Science 2026-04-17 Jorge Acosta-Hernández , Alexander Lex , Tingying He

Many real world network problems often concern multivariate nodal attributes such as image, textual, and multi-view feature vectors on nodes, rather than simple univariate nodal attributes. The existing graph estimation methods built on…

Machine Learning · Statistics 2013-04-23 Mladen Kolar , Han Liu , Eric P. Xing

The adjacency matrix is the most fundamental and intuitive object in graph analysis that is useful not only mathematically but also for visualizing the structures of graphs. Because the appearance of an adjacency matrix is critically…

Social and Information Networks · Computer Science 2023-04-07 Tatsuro Kawamoto , Teruyoshi Kobayashi

Studies often estimate associations between an outcome and multiple variates. For example, studies of diagnostic test accuracy estimate sensitivity and specificity, and studies of predictive and prognostic factors typically estimate…

Graph coarsening is a widely used dimensionality reduction technique for approaching large-scale graph machine learning problems. Given a large graph, graph coarsening aims to learn a smaller-tractable graph while preserving the properties…

Machine Learning · Statistics 2022-10-04 Manoj Kumar , Anurag Sharma , Sandeep Kumar