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This paper studies the mathematical properties of collectively canalizing Boolean functions, a class of functions that has arisen from applications in systems biology. Boolean networks are an increasingly popular modeling framework for…

Discrete Mathematics · Computer Science 2023-06-07 Claus Kadelka , Benjamin Keilty , Reinhard Laubenbacher

This paper presents an algorithm for approximating certain types of dynamical systems given by a system of ordinary delay differential equations by a Boolean network model. Often Boolean models are much simpler to understand than complex…

Molecular Networks · Quantitative Biology 2011-05-10 Franziska Hinkelmann , Reinhard Laubenbacher

Representations are essential to mathematically model phenomena, but there are many options available. While each of those options provides useful properties with which to solve problems related to the phenomena in study, comparing results…

Logic in Computer Science · Computer Science 2025-10-01 Luke Bayzid , Alexandre Madeira , Manuel A. Martins

The relationship between the properties of a dynamical system and the structure of its defining equations has long been studied in many contexts. Here we study this problem for the class of conjunctive (resp. disjunctive) Boolean networks,…

Combinatorics · Mathematics 2008-05-13 Abdul Salam Jarrah , Reinhard Laubenbacher , Alan Veliz-Cuba

We realize autonomous Boolean networks by using logic gates in their autonomous mode-of-operation on a field-programmable gate array. This allows us to implement time-continuous systems with complex dynamical behaviors that can be…

Adaptation and Self-Organizing Systems · Physics 2013-12-16 David P. Rosin , Damien Rontani , Daniel J. Gauthier , Eckehard Schöll

Dynamical systems theory and complexity science provide powerful tools for analysing artificial agents and robots. Furthermore, they have been recently proposed also as a source of design principles and guidelines. Boolean networks are a…

Artificial Intelligence · Computer Science 2015-03-18 Andrea Roli , Mattia Manfroni , Carlo Pinciroli , Mauro Birattari

Boolean networks with canalizing functions are used to model gene regulatory networks. In order to learn how such networks may behave under evolutionary forces, we simulate the evolution of a single Boolean network by means of an adaptive…

Populations and Evolution · Quantitative Biology 2011-11-09 Agnes Szejka , Barbara Drossel

To engage human users in meaningful conversation, open-domain dialogue agents are required to generate diverse and contextually coherent dialogue. Despite recent advancements, which can be attributed to the usage of pretrained language…

Computation and Language · Computer Science 2023-11-21 Jing Yang Lee , Kong Aik Lee , Woon-Seng Gan

Mathematical models are increasingly used in both academia and the pharmaceutical industry to understand how phenotypes emerge from systems of molecular interactions. However, their current construction as monolithic sets of equations…

Molecular Networks · Quantitative Biology 2007-10-19 Aneil Mallavarapu , Matthew Thomson , Benjamin Ullian , Jeremy Gunawardena

Energy systems optimisation models are a leading tool for informing decisions in the energy transition. However, these models often remain opaque, and results are frequently presented without a clear discussion of their epistemic…

Simplicial complexes are generalized network structures able to encode interactions occurring between more than two nodes. Simplicial complexes describe a large variety of complex interacting systems ranging from brain networks, to social…

Physics and Society · Physics 2016-06-22 Owen T. Courtney , Ginestra Bianconi

Bayesian networks provide an elegant formalism for representing and reasoning about uncertainty using probability theory. Theyare a probabilistic extension of propositional logic and, hence, inherit some of the limitations of propositional…

Artificial Intelligence · Computer Science 2007-05-23 Kristian Kersting , Luc De Raedt

We present a tractable, incremental framework for topological dialogue semantics based on finite, discrete semantic spaces. Building on the intuition that utterances correspond to open sets and their combinatorial relations form a…

Logic in Computer Science · Computer Science 2025-06-17 Andreu Ballus Santacana

The problem of explaining inconsistency-tolerant reasoning in knowledge bases (KBs) is a prominent topic in Artificial Intelligence (AI). While there is some work on this problem, the explanations provided by existing approaches often lack…

Artificial Intelligence · Computer Science 2025-02-18 Loan Ho , Stefan Schlobach

The paper introduces a framework for the evaluation of the encoding of factual scientific knowledge, designed to streamline the manual evaluation process typically conducted by domain experts. Inferring over and extracting information from…

Computation and Language · Computer Science 2024-10-21 Magdalena Wysocka , Oskar Wysocki , Maxime Delmas , Vincent Mutel , Andre Freitas

Large language models (LLMs) process and predict sequences containing text to answer questions, and address tasks including document summarization, providing recommendations, writing software and solving quantitative problems. We provide a…

Numerical Analysis · Mathematics 2026-02-02 Ricardo Baptista , Andrew Stuart , Son Tran

Dialectica categories are a very versatile categorical model of linear logic. These have been used to model many seemingly different things (e.g., Petri nets and Lambek's calculus). In this note, we expand our previous work on fuzzy petri…

Logic in Computer Science · Computer Science 2011-07-14 Apostolos Syropoulos , Valeria de Paiva

This paper presents DIALOG (Digital Investigation Ontology); a framework for the management, reuse, and analysis of Digital Investigation knowledge. DIALOG provides a general, application independent vocabulary that can be used to describe…

Digital Libraries · Computer Science 2019-03-08 Damir Kahvedzic , Tahar Kechadi

Normative non-functional requirements specify constraints that a system must observe in order to avoid violations of social, legal, ethical, empathetic, and cultural norms. As these requirements are typically defined by non-technical system…

This paper proposes a structural and dynamical framework for modeling cognitive processes within a cybernetic perspective. Cognitive states are represented as elements of a state space evolving through an iterative update rule of the form…

Artificial Intelligence · Computer Science 2026-05-26 Carlo Cattani , Dioneia Motta Monte-Serrat
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