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Endometriosis ultrasound reports are often unstructured free-text documents that require manual abstraction for downstream tasks such as analytics, machine learning model training, and clinical auditing. We present \textbf{EndoExtract}, an…

Human-Computer Interaction · Computer Science 2026-02-17 Haiyi Li , Yiyang Zhao , Yutong Li , Alison Deslandes , Jodie Avery , Mathew Leonardi , Mary Louise Hull , Hsiang-Ting Chen

Medical imaging is crucial for diagnosing, monitoring, and treating medical conditions. The medical reports of radiology images are the primary medium through which medical professionals attest their findings, but their writing is time…

Computation and Language · Computer Science 2025-01-07 Iustin Sîrbu , Iulia-Renata Sîrbu , Jasmina Bogojeska , Traian Rebedea

Europe's healthcare systems require enhanced interoperability and digitalization, driving a demand for innovative solutions to process legacy clinical data. This paper presents the results of our project, which aims to leverage Large…

Computation and Language · Computer Science 2025-07-09 Aynur Guluzade , Naguib Heiba , Zeyd Boukhers , Florim Hamiti , Jahid Hasan Polash , Yehya Mohamad , Carlos A Velasco

Extracting structured information from visual documents (Visual Information Extraction, VIE) is a cornerstone of business automation. While recent Multimodal Large Language Models (MLLMs) have shown promising capabilities, existing…

Computer Vision and Pattern Recognition · Computer Science 2026-05-22 Yandi Wang , Libin Zhan , Ziwei Huang , Tiancheng Luo , Yuxuan Jiang , Wang Dong , Leilei Gan , Jun Chen

Medical concept extraction from electronic health records underpins many downstream applications, yet remains challenging because medically meaningful concepts are frequently implied rather than explicitly stated in medical narratives.…

Computation and Language · Computer Science 2026-05-21 Zhichao Yang , Gregory D. Lyng , Sanjit Singh Batra , Robert E. Tillman

Medical vision-language models often struggle with generating accurate quantitative measurements in radiology reports, leading to hallucinations that undermine clinical reliability. We introduce FactCheXcker, a modular framework that…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Alice Heiman , Xiaoman Zhang , Emma Chen , Sung Eun Kim , Pranav Rajpurkar

Large language model editing methods frequently suffer from overfitting, wherein factual updates can propagate beyond their intended scope, overemphasizing the edited target even when it's contextually inappropriate. To address this…

Artificial Intelligence · Computer Science 2025-05-27 Haitian Zhong , Yuhuan Liu , Ziyang Xu , Guofan Liu , Qiang Liu , Shu Wu , Zhe Zhao , Liang Wang , Tieniu Tan

Automated analysis of chest radiography using deep learning has tremendous potential to enhance the clinical diagnosis of diseases in patients. However, deep learning models typically require large amounts of annotated data to achieve high…

Computer Vision and Pattern Recognition · Computer Science 2023-04-10 Keegan Quigley , Miriam Cha , Ruizhi Liao , Geeticka Chauhan , Steven Horng , Seth Berkowitz , Polina Golland

Understanding how explicit theoretical features are encoded in opaque neural systems is a central challenge now common to neuroscience and AI. We introduce Metric Learning Encoding Models (MLEMs) to address this challenge most directly as a…

Computation and Language · Computer Science 2025-11-17 Louis Jalouzot , Christophe Pallier , Emmanuel Chemla , Yair Lakretz

The continuous advancement of large language models (LLMs) has brought increasing attention to the critical issue of developing fair and reliable methods for evaluating their performance. Particularly, the emergence of cheating phenomena,…

Computation and Language · Computer Science 2025-02-26 Qingchen Yu , Zifan Zheng , Shichao Song , Zhiyu Li , Feiyu Xiong , Bo Tang , Ding Chen

Extracting structured information from clinical notes requires navigating a dense web of interdependent variables where the value of one attribute logically constrains others. Existing Large Language Model (LLM)-based extraction pipelines…

Developing the required technology to assist medical experts in their everyday activities is currently a hot topic in the Artificial Intelligence research field. Thus, a number of large language models (LLMs) and automated benchmarks have…

Computation and Language · Computer Science 2023-12-04 Iakes Goenaga , Aitziber Atutxa , Koldo Gojenola , Maite Oronoz , Rodrigo Agerri

Radiology reports convey detailed clinical observations and capture diagnostic reasoning that evolves over time. However, existing evaluation methods are limited to single-report settings and rely on coarse metrics that fail to capture…

Predicting the judgment of a legal case from its unannotated case facts is a challenging task. The lengthy and non-uniform document structure poses an even greater challenge in extracting information for decision prediction. In this work,…

Computation and Language · Computer Science 2023-11-15 Nishchal Prasad , Mohand Boughanem , Taoufiq Dkaki

The rapid advancement of large language models (LLMs) has opened new boundaries in the extraction and synthesis of medical knowledge, particularly within evidence synthesis. This paper reviews the state-of-the-art applications of LLMs in…

Recent advances in text-conditioned image generation diffusion models have begun paving the way for new opportunities in modern medical domain, in particular, generating Chest X-rays (CXRs) from diagnostic reports. Nonetheless, to further…

Computer Vision and Pattern Recognition · Computer Science 2024-03-12 Woojung Han , Chanyoung Kim , Dayun Ju , Yumin Shim , Seong Jae Hwang

Motivation: Patient-generated text contains critical information about patients' lived experiences, social circumstances, and engagement in care, including factors that strongly influence adherence, care coordination, and health equity.…

Computation and Language · Computer Science 2026-03-09 Samah Fodeh , Linhai Ma , Ganesh Puthiaraju , Srivani Talakokkul , Afshan Khan , Ashley Hagaman , Sarah Lowe , Aimee Roundtree

The automation of chest X-ray reporting has garnered significant interest due to the time-consuming nature of the task. However, the clinical accuracy of free-text reports has proven challenging to quantify using natural language processing…

Computer Vision and Pattern Recognition · Computer Science 2023-05-03 Matthias Keicher , Kamilia Zaripova , Tobias Czempiel , Kristina Mach , Ashkan Khakzar , Nassir Navab

One of the cardinal tasks in achieving robust medical question answering systems is textual entailment. The existing approaches make use of an ensemble of pre-trained language models or data augmentation, often to clock higher numbers on…

Computation and Language · Computer Science 2020-11-11 Shweta Yadav , Vishal Pallagani , Amit Sheth

Radiology reports are invaluable for clinical decision-making and hold great potential for automated analysis when structured into machine-readable formats. These reports often contain uncertainty, which we categorize into two distinct…

Computation and Language · Computer Science 2026-03-02 Paloma Rabaey , Jong Hak Moon , Jung-Oh Lee , Min Gwan Kim , Hangyul Yoon , Thomas Demeester , Edward Choi