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Automatically tuning parallel compute kernels allows libraries and frameworks to achieve performance on a wide range of hardware, however these techniques are typically focused on finding optimal kernel parameters for particular input sizes…

Performance · Computer Science 2020-09-01 John Lawson

While programming is one of the most broadly applicable skills in modern society, modern machine learning models still cannot code solutions to basic problems. Despite its importance, there has been surprisingly little work on evaluating…

The selection, development, or comparison of machine learning methods in data mining can be a difficult task based on the target problem and goals of a particular study. Numerous publicly available real-world and simulated benchmark…

Machine Learning · Computer Science 2017-03-03 Randal S. Olson , William La Cava , Patryk Orzechowski , Ryan J. Urbanowicz , Jason H. Moore

Holistic benchmarks for quantum computers are essential for testing and summarizing the performance of quantum hardware. However, holistic benchmarks -- such as algorithmic or randomized benchmarks -- typically do not predict a processor's…

Quantum Physics · Physics 2023-05-16 Daniel Hothem , Jordan Hines , Karthik Nataraj , Robin Blume-Kohout , Timothy Proctor

For scientific software, especially those used for large-scale simulations, achieving good performance and efficiently using the available hardware resources is essential. It is important to regularly perform benchmarks to ensure the…

Bayesian models of cognition have gained considerable traction in computational neuroscience and psychiatry. Their scopes are now expected to expand rapidly to artificial intelligence, providing general inference frameworks to support…

Neural and Evolutionary Computing · Computer Science 2025-08-07 Nicolas Legrand , Lilian Weber , Peter Thestrup Waade , Anna Hedvig Møller Daugaard , Mojtaba Khodadadi , Nace Mikuš , Chris Mathys

Random Linear Network Coding (RLNC) has emerged as a powerful tool for robust high-throughput multicast. Projection analysis - a recently introduced technique - shows that the distributed packetized RLNC protocol achieves (order) optimal…

Information Theory · Computer Science 2011-02-17 Bernhard Haeupler , Muriel Médard

Recent advances in hardware and big data acquisition have accelerated the development of deep learning techniques. For an extended period of time, increasing the model complexity has led to performance improvements for various tasks.…

Machine Learning · Computer Science 2023-07-24 Damian Owerko , Charilaos I. Kanatsoulis , Jennifer Bondarchuk , Donald J. Bucci , Alejandro Ribeiro

Benchmarking, which involves collecting reference datasets and demonstrating method performances, is a requirement for the development of new computational tools, but also becomes a domain of its own to achieve neutral comparisons of…

Other Quantitative Biology · Quantitative Biology 2025-07-24 Izaskun Mallona , Charlotte Soneson , Ben Carrillo , Almut Luetge , Daniel Incicau , Reto Gerber , Anthony Sonrel , Mark D. Robinson

Molecular machine learning has been maturing rapidly over the last few years. Improved methods and the presence of larger datasets have enabled machine learning algorithms to make increasingly accurate predictions about molecular…

It is common to evaluate the performance of a machine learning model by measuring its predictive power on a test dataset. This approach favors complicated models that can smoothly fit complex functions and generalize well from training data…

Machine Learning · Computer Science 2022-10-07 Hugo Cisneros , Josef Sivic , Tomas Mikolov

Large-scale graph training is a notoriously challenging problem for graph neural networks (GNNs). Due to the nature of evolving graph structures into the training process, vanilla GNNs usually fail to scale up, limited by the GPU memory…

Machine Learning · Computer Science 2023-03-02 Keyu Duan , Zirui Liu , Peihao Wang , Wenqing Zheng , Kaixiong Zhou , Tianlong Chen , Xia Hu , Zhangyang Wang

Predictive coding networks (PCNs) are an influential model for information processing in the brain. They have appealing theoretical interpretations and offer a single mechanism that accounts for diverse perceptual phenomena of the brain. On…

Machine Learning · Computer Science 2021-03-08 Tommaso Salvatori , Yuhang Song , Thomas Lukasiewicz , Rafal Bogacz , Zhenghua Xu

As machine learning becomes increasingly central to molecular design, it is vital to ensure the reliability of learnable protein-ligand scoring functions on novel protein targets. While many scoring functions perform well on standard…

Machine Learning · Computer Science 2025-12-08 Jakub Kopko , David Graber , Saltuk Mustafa Eyrilmez , Stanislav Mazurenko , David Bednar , Jiri Sedlar , Josef Sivic

Present day machine learning is computationally intensive and processes large amounts of data. It is implemented in a distributed fashion in order to address these scalability issues. The work is parallelized across a number of computing…

Machine Learning · Computer Science 2017-03-28 Alexander Ulanov , Andrey Simanovsky , Manish Marwah

Benchmarking models via classical simulations is one of the main ways to judge ideas in quantum machine learning before noise-free hardware is available. However, the huge impact of the experimental design on the results, the small scales…

Quantum Physics · Physics 2024-03-15 Joseph Bowles , Shahnawaz Ahmed , Maria Schuld

Recent progress in deep learning has been driven by increasingly larger models. However, their computational and energy demands have grown proportionally, creating significant barriers to their deployment and to a wider adoption of deep…

Machine Learning · Computer Science 2025-09-16 Pedro Savarese

Modern computational neuroscience strives to develop complex network models to explain dynamics and function of brains in health and disease. This process goes hand in hand with advancements in the theory of neuronal networks and increasing…

The reproduction and replication of novel results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the issues closely revolve around the…

Software Engineering · Computer Science 2014-09-17 Tom Crick , Benjamin A. Hall , Samin Ishtiaq

Modern HPC systems are built with innovative system architectures and novel programming models to further push the speed limit of computing. The increased complexity poses challenges for performance portability and performance evaluation.…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-29 Holger Brunst , Sunita Chandrasekaran , Florina Ciorba , Nick Hagerty , Robert Henschel , Guido Juckeland , Junjie Li , Veronica G. Melesse Vergara , Sandra Wienke , Miguel Zavala