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Related papers: ODIN: Open Data In Neurophysiology: Advancements, …

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Recent advances in spatial omics technologies have revolutionized our ability to study biological systems with unprecedented resolution. By preserving the spatial context of molecular measurements, these methods enable comprehensive mapping…

Quantitative Methods · Quantitative Biology 2025-09-18 Zhiwei Fan , Tiangang Wang , Kexin Huang , Binwu Ying , Xiaobo Zhou

Neurons are the fundamental building blocks of deep neural networks, and their interconnections allow AI to achieve unprecedented results. Motivated by the goal of understanding how neurons encode information, compositional explanations…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Biagio La Rosa , Leilani H. Gilpin

Rapid advances in human genomics are enabling researchers to gain a better understanding of the role of the genome in our health and well-being, stimulating hope for more effective and cost efficient healthcare. However, this also prompts a…

Cryptography and Security · Computer Science 2018-08-20 Alexandros Mittos , Bradley Malin , Emiliano De Cristofaro

Brain Imaging Data Structure (BIDS) allows the user to organise brain imaging data into a clear and easy standard directory structure. BIDS is widely supported by the scientific community and is considered a powerful standard for…

Neuroscience has recently made much progress, expanding the complexity of both neural-activity measurements and brain-computational models. However, we lack robust methods for connecting theory and experiment by evaluating our new big…

Quantitative Methods · Quantitative Biology 2023-07-06 Heiko H. Schütt , Alexander D. Kipnis , Jörn Diedrichsen , Nikolaus Kriegeskorte

As AI systems become increasingly powerful, the need for safe AI has become more pressing. Humans are an attractive model for AI safety: as the only known agents capable of general intelligence, they perform robustly even under conditions…

Economies are complex man-made systems where organisms and markets interact according to motivations and principles not entirely understood yet. The increasing dissatisfaction with the postulates of traditional economics i.e. perfectly…

Adaptation and Self-Organizing Systems · Physics 2012-06-04 Jaime Gomez-Ramirez , Manuel G. Bedia

Due to their great performance and scalability properties neural networks have become ubiquitous building blocks of many applications. With the rise of mobile and IoT, these models now are also being increasingly applied in distributed…

Machine Learning · Computer Science 2020-03-09 Felix Sattler , Thomas Wiegand , Wojciech Samek

While artificial intelligence (AI) has become widespread, many commercial AI systems are not yet accessible to individual researchers nor the general public due to the deep knowledge of the systems required to use them. We believe that AI…

To ensure that AI-infused systems work for disabled people, we need to bring accessibility datasets sourced from this community in the development lifecycle. However, there are many ethical and privacy concerns limiting greater data…

Computers and Society · Computer Science 2023-03-10 Rie Kamikubo , Kyungjun Lee , Hernisa Kacorri

Function and dysfunctions of neural systems are tied to the temporal evolution of neural states. The current limitations in showing their causal role stem largely from the absence of tools capable of probing the brain's internal state in…

Neurons and Cognition · Quantitative Biology 2024-09-24 Ayesha Vermani , Matthew Dowling , Hyungju Jeon , Ian Jordan , Josue Nassar , Yves Bernaerts , Yuan Zhao , Steven Van Vaerenbergh , Il Memming Park

The advent of large-scale neural recordings has enabled new methods to discover the computational mechanisms of neural circuits by understanding the rules that govern how their state evolves over time. While these \textit{neural dynamics}…

Neurons and Cognition · Quantitative Biology 2023-09-13 Christopher Versteeg , Andrew R. Sedler , Jonathan D. McCart , Chethan Pandarinath

Learning with physical systems is an emerging paradigm that seeks to harness the intrinsic nonlinear dynamics of physical substrates for learning. The impetus for a paradigm shift in how hardware is used for computational intelligence stems…

Disordered Systems and Neural Networks · Physics 2026-04-28 Francesco Caravelli , Gianluca Milano , Adam Z. Stieg , Carlo Ricciardi , Simon Anthony Brown , Zdenka Kuncic

The recent explosion of recorded digital data and its processed derivatives threatens to overwhelm researchers when analysing their experimental data or when looking up data items in archives and file systems. While current hardware…

The study of complex many-body systems via analysis of the trajectories of the units that dynamically move and interact within them is a non-trivial task. The workflow for extracting meaningful information from the raw trajectory data is…

Materials Science · Physics 2025-10-31 Simone Martino , Matteo Becchi , Andrew Tarzia , Daniele Rapetti , Giovanni M. Pavan

To take advantage of recent and ongoing advances in large-scale computational methods, and to preserve the scientific data created by publicly funded research projects, data archives must be created as well as standards for specifying,…

Quantitative Methods · Quantitative Biology 2022-03-08 Arnaud Delorme , Dung Truong , Choonhan Youn , Subha Sivagnanam , Kenneth Yoshimoto , Russell A. Poldrack , Amit Majumdar , Scott Makeig

Open Science has been a rising theme in the landscape of science policy in recent years. The goal is to make research that emerges from publicly funded science to become findable, accessible, interoperable and reusable (FAIR) for use by…

Digital Libraries · Computer Science 2020-05-29 Julia Heuritsch

Objective: To (1) demonstrate the implementation of a data science platform built on open-source technology within a large, academic healthcare system and (2) describe two computational healthcare applications built on such a platform.…

We present OpenML and mldata, open science platforms that provides easy access to machine learning data, software and results to encourage further study and application. They go beyond the more traditional repositories for data sets and…

Machine Learning · Computer Science 2014-02-26 Joaquin Vanschoren , Mikio L. Braun , Cheng Soon Ong

With advanced imaging, sequencing, and profiling technologies, multiple omics data become increasingly available and hold promises for many healthcare applications such as cancer diagnosis and treatment. Multimodal learning for integrative…

Genomics · Quantitative Biology 2022-12-20 Sina Tabakhi , Mohammod Naimul Islam Suvon , Pegah Ahadian , Haiping Lu
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