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Measurement in biological systems became a subject of concern as a consequence of numerous reports on limited reproducibility of experimental results. To reveal origins of this inconsistency, we have examined general features of biological…

Other Quantitative Biology · Quantitative Biology 2017-04-03 Dalibor Štys , Jan Urban , Renata Rychtáriková , Anna Zhyrova , Petr Císař

It is believed that an isolated and far-from-equilibrium quantum many-body system should try to attain equilibrium via a mechanism whereby any given subsystem acts as an open quantum system that is coupled to an environment, which is the…

Quantum Physics · Physics 2025-07-08 Aditya Banerjee

Likelihood-based inference in stochastic non-linear dynamical systems, such as those found in chemical reaction networks and biological clock systems, is inherently complex and has largely been limited to small and unrealistically simple…

Computation · Statistics 2024-07-08 Ben Swallow , David A. Rand , Giorgos Minas

We establish, through coarse-grained computation, a connection between traditional, continuum numerical algorithms (initial value problems as well as fixed point algorithms) and atomistic simulations of the Larson model of micelle…

Soft Condensed Matter · Physics 2009-11-10 Dmitry I. Kopelevich , Athanassios Z. Panagiotopoulos , Ioannis G. Kevrekidis

In random systems consisting of grains with size distributions the transport properties are difficult to explore by network models. However, the concentration dependence of effective conductivity and its critical properties can be…

Statistical Mechanics · Physics 2007-05-23 Ryszard Piasecki

Learning the unknown causal parameters of a linear structural causal model is a fundamental task in causal analysis. The task, known as the problem of identification, asks to estimate the parameters of the model from a combination of…

Artificial Intelligence · Computer Science 2024-07-18 Julian Dörfler , Benito van der Zander , Markus Bläser , Maciej Liskiewicz

The design of reliable indicators to anticipate critical transitions in complex systems is an im portant task in order to detect a coming sudden regime shift and to take action in order to either prevent it or mitigate its consequences. We…

Data Analysis, Statistics and Probability · Physics 2022-12-14 Martin Heßler , Oliver Kamps

Markov Switching models have had increasing success in time series analysis due to their ability to capture the existence of unobserved discrete states in the dynamics of the variables under study. This result is generally obtained thanks…

Applications · Statistics 2023-05-23 Edoardo Otranto , Luca Scaffidi Domianello

This chapter reviews the microeconometrics literature on partial identification, focusing on the developments of the last thirty years. The topics presented illustrate that the available data combined with credible maintained assumptions…

Econometrics · Economics 2020-04-27 Francesca Molinari

Generalizing response theory of open systems far from equilibrium is a central quest of nonequilibrium statistical physics. Using stochastic thermodynamics, we develop an algebraic method to study the response of nonequilibrium steady state…

Statistical Mechanics · Physics 2023-08-09 Timur Aslyamov , Massimiliano Esposito

In this paper, we examine identification in dynamic panel logit models with state dependence, a first-order Markov feedback process, and individual unobserved heterogeneity by introducing sufficient statistics for the feedback process and…

Econometrics · Economics 2026-05-04 Sukgyu Shin

Interpreting partial information collected from systems subject to noise is a key problem across scientific disciplines. Theoretical frameworks often focus on the dynamics of variables that result from coarse-graining the internal states of…

Statistical Mechanics · Physics 2022-08-18 Pedro E. Harunari , Annwesha Dutta , Matteo Polettini , Édgar Roldán

We consider the application of fluctuation relations to the dynamics of coarse-grained systems, as might arise in a hypothetical experiment in which a system is monitored with a low-resolution measuring apparatus. We analyze a stochastic,…

Statistical Mechanics · Physics 2007-09-19 Saar Rahav , Christopher Jarzynski

Finding coarse-grained, low-dimensional descriptions is an important task in the analysis of complex, stochastic models of gene regulatory networks. This task involves (a) identifying observables that best describe the state of these…

Quantitative Methods · Quantitative Biology 2015-06-26 Radek Erban , Thomas A. Frewen , Xiao Wang , Timothy C. Elston , Ronald Coifman , Boaz Nadler , Ioannis G. Kevrekidis

We present a framework for deciding whether a quantum state is separable or entangled using covariance matrices of locally measurable observables. This leads to the covariance matrix criterion as a general separability criterion. We…

Quantum Physics · Physics 2008-12-03 Oleg Gittsovich , Otfried Gühne , Philipp Hyllus , Jens Eisert

The theory of large deviations has been applied successfully in the last 30 years or so to study the properties of equilibrium systems and to put the foundations of equilibrium statistical mechanics on a clearer and more rigorous footing. A…

Statistical Mechanics · Physics 2018-09-14 Hugo Touchette , Rosemary J. Harris

We derive a fine-grained uncertainty relation for the measurement of two incompatible observables on a single quantum system of continuous variables, and show that continuous variable systems are more uncertain than discrete variable…

Quantum Physics · Physics 2015-10-19 Priyanka Chowdhury , Tanumoy Pramanik , Archan S. Majumdar

We study a nonlinear graphon particle system driven by both idiosyncratic and common noise, where interactions are governed by a graphon and represented as positive finite measures. Each particle evolves via a McKean-Vlasov-type SDE with…

Probability · Mathematics 2026-04-28 Erhan Bayraktar , Xihao He , Donghan Kim

Currently available separability criteria for continuous-variable states are generally based on the covariance matrix of quadrature operators. The well-known separability criterion of Duan et al. [Phys. Rev. Lett. 84, 2722 (2000)] and Simon…

Quantum Physics · Physics 2016-03-24 Anaelle Hertz , Evgueni Karpov , Aikaterini Mandilara , Nicolas J. Cerf

In this work, we present a novel nonlocal nonlinear coarse grid approximation using a machine learning algorithm. We consider unsaturated and two-phase flow problems in heterogeneous and fractured porous media, where mathematical models are…

Numerical Analysis · Mathematics 2020-04-22 Maria Vasilyeva , Wing T. Leung , Eric T. Chung , Yalchin Efendiev , Mary Wheeler
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