Related papers: Exact Minimum Weight Spanners via Column Generatio…
The classic technique of Baker [J. ACM '94] is the most fundamental approach for designing approximation schemes on planar, or more generally topologically-constrained graphs, and it has been applied in a myriad of different variants and…
An $(\alpha,\beta)$-spanner of a weighted graph $G=(V,E)$, is a subgraph $H$ such that for every $u,v\in V$, $d_G(u,v) \le d_H(u,v)\le\alpha\cdot d_G(u,v)+\beta$. The main parameters of interest for spanners are their size (number of edges)…
For clustering of an undirected graph, this paper presents an exact algorithm for the maximization of modularity density, a more complicated criterion to overcome drawbacks of the well-known modularity. The problem can be interpreted as the…
Column Generation (CG) is an effective and iterative algorithm to solve large-scale linear programs (LP). During each CG iteration, new columns are added to improve the solution of the LP. Typically, CG greedily selects one column with the…
Given a flow network, the Minimum Flow Decomposition (MFD) problem is finding the smallest possible set of weighted paths whose superposition equals the flow. It is a classical, strongly NP-hard problem that is proven to be useful in RNA…
Set covering problem is an important class of combinatorial optimization problems, which has been widely applied and studied in many fields. In this paper, we propose an improved column generation algorithm with neural prediction (CG-P) for…
We study a class of nested path problems, in which every path-based variable can be decomposed into a sequence of subpaths. Subpaths must satisfy local resources, while paths must satisfy additional global resources. This paper develops a…
Column generation (CG) is a well-established method for solving large-scale linear programs. It involves iteratively optimizing a subproblem containing a subset of columns and using its dual solution to generate new columns with negative…
Elementary flux modes (EFMs) are vectors defined from a metabolic reaction network, giving the connections between substrates and products. EFMs-based metabolic flux analysis (MFA) estimates the flux over each EFM from external flux…
Least-absolute-deviations (LAD) line fitting is robust to outliers but computationally more involved than least squares regression. Although the literature includes linear and near-linear time algorithms for the LAD line fitting problem,…
A cycle cover of a graph is a set of cycles such that every vertex is part of exactly one cycle. An L-cycle cover is a cycle cover in which the length of every cycle is in the set L. We investigate how well L-cycle covers of minimum weight…
We present a factor $14D^2$ approximation algorithm for the minimum linear arrangement problem on series-parallel graphs, where $D$ is the maximum degree in the graph. Given a suitable decomposition of the graph, our algorithm runs in time…
Given a graph $G$, the NP-hard Maximum Planar Subgraph problem asks for a planar subgraph of $G$ with the maximum number of edges. The only known non-trivial exact algorithm utilizes Kuratowski's famous planarity criterion and can be…
The problem of finding the longest simple cycle in a directed graph is NP-hard, with critical applications in computational biology, scheduling, and network analysis. Existing approaches include exact algorithms with exponential runtimes,…
Finding maximum-weight independent sets in graphs is an important NP-hard optimization problem. Given a vertex-weighted graph $G$, the task is to find a subset of pairwise non-adjacent vertices of $G$ with maximum weight. Most recently…
Weighted low rank approximation is a fundamental problem in numerical linear algebra, and it has many applications in machine learning. Given a matrix $M \in \mathbb{R}^{n \times n}$, a non-negative weight matrix $W \in \mathbb{R}_{\geq…
Discrete Optimal Transport problems give rise to very large linear programs (LP) with a particular structure of the constraint matrix. In this paper we present a hybrid algorithm that mixes an interior point method (IPM) and column…
We use exponential start time clustering to design faster and more work-efficient parallel graph algorithms involving distances. Previous algorithms usually rely on graph decomposition routines with strict restrictions on the diameters of…
One powerful technique to solve NP-hard optimization problems in practice is branch-and-reduce search---which is branch-and-bound that intermixes branching with reductions to decrease the input size. While this technique is known to be very…
We present the first polynomial time algorithm for the f vertex fault tolerant spanner problem, which achieves almost optimal spanner size. Our algorithm for constructing f vertex fault tolerant spanner takes $O(k\cdot n\cdot m^2 \cdot W)$…