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Training population selection for genomic selection has captured a great deal of interest in animal and plant breeding. In this article, we derive a computationally efficient statistic to measure the reliability of estimates of genetic…

Methodology · Statistics 2014-05-22 Deniz Akdemir

Artificial Intelligence (AI) has the potential to revolutionize various sectors, yet its adoption is often hindered by concerns about data privacy, security, and the understanding of AI capabilities. This paper synthesizes AI governance…

Computers and Society · Computer Science 2024-10-04 Dian W. Tjondronegoro

Artificial intelligence (AI) systems are becoming critical components of today's IT landscapes. Their resilience against attacks and other environmental influences needs to be ensured just like for other IT assets. Considering the…

Therapeutic antibody candidates often require extensive engineering to improve key functional and developability properties before clinical development. This can be achieved through iterative design, where starting molecules are optimized…

Machine Learning · Computer Science 2025-09-23 Aniruddh Raghu , Sebastian Ober , Maxwell Kazman , Hunter Elliott

Achieving complete reproducibility in science, particularly in research fields such as biodiversity, is challenging due to analytical choices, bias and interpretation. Here, we examine examples of reproducibility in biological systematics,…

Other Quantitative Biology · Quantitative Biology 2025-08-01 Charles Morphy D. Santos , Luciana Campos Paulino , Michaella P. Andrade , Gabriel Tognella-Poccia , João Paulo Gois

The adaptive immune system is a natural diagnostic and therapeutic. It recognizes threats earlier than clinical symptoms manifest and neutralizes antigen with exquisite specificity. Recognition specificity and broad reactivity is enabled…

Quantitative Methods · Quantitative Biology 2019-07-26 Alex J. Brown , Igor Snapkov , Rahmad Akbar , Milena Pavlović , Enkelejda Miho , Geir K. Sandve , Victor Greiff

Machine learning methods have achieved good performance and been widely applied in various real-world applications. They can learn the model adaptively and be better fit for special requirements of different tasks. Generally, a good machine…

Computer Vision and Pattern Recognition · Computer Science 2019-05-21 Zhiqiang Gong , Ping Zhong , Weidong Hu

The emerging field of high-throughput compartmentalized in vitro evolution is a promising new approach to protein engineering. In these experiments, libraries of mutant genotypes are randomly distributed and expressed in microscopic…

Populations and Evolution · Quantitative Biology 2019-11-06 Anton S. Zadorin , Yannick Rondelez

Trap cropping is a pest management strategy where a grower plants an attractive "trap crop" alongside the primary crop to divert pests away from it. We propose a simple framework for optimizing the proportion of a grower's field or…

Populations and Evolution · Quantitative Biology 2025-08-11 Matthew H Holden

The firefly algorithm has become an increasingly important tool of Swarm Intelligence that has been applied in almost all areas of optimization, as well as engineering practice. Many problems from various areas have been successfully solved…

Neural and Evolutionary Computing · Computer Science 2013-12-24 Iztok Fister , Iztok Fister , Xin-She Yang , Janez Brest

Massive efforts are made to reduce biases in both data and algorithms in order to render AI applications fair. These efforts are propelled by various high-profile cases where biased algorithmic decision-making caused harm to women, people…

Machine Learning · Computer Science 2022-09-01 Thilo Hagendorff , Leonie Bossert , Tse Yip Fai , Peter Singer

Neural network models of real-world systems, such as industrial processes, made from sensor data must often rely on incomplete data. System states may not all be known, sensor data may be biased or noisy, and it is not often known which…

Neural and Evolutionary Computing · Computer Science 2007-06-08 Donald A. Sofge , David L. Elliott

Aquaculture is pivotal for global food security but faces significant challenges from infectious diseases, particularly those caused by Streptococcus species such as Streptococcus iniae and Streptococcus agalactiae. These pathogens induce…

Populations and Evolution · Quantitative Biology 2025-11-03 Hussein Aliu Sule , Abdulwakil Olawale Saba , Choo Yee Yu

1) Biological collections house millions of specimens with digital images increasingly available through open-access platforms. However, most imaging protocols were developed for human interpretation without considering automated analysis…

Pest and disease classification is a challenging issue in agriculture. The performance of deep learning models is intricately linked to training data diversity and quantity, posing issues for plant pest and disease datasets that remain…

Computer Vision and Pattern Recognition · Computer Science 2025-09-17 Zhengle Wang , Ruifeng Wang , Minjuan Wang , Tianyun Lai , Man Zhang

Global climate change has reduced crop resilience and pesticide efficacy, making reliance on synthetic pesticides inevitable, even though their widespread use poses significant health and environmental risks. While these pesticides remain a…

Machine Learning · Computer Science 2025-03-17 Taehan Kim , Wonduk Seo

Protein evolution underpins life, and understanding its behavior as a system is of great importance. However, our current models of protein evolution are arguably too simplistic to allow quantitative interpretation and prediction of…

Insects play such a crucial role in ecosystems that a shift in demography of just a few species can have devastating consequences at environmental, social and economic levels. Despite this, evaluation of insect demography is strongly…

Computer Vision and Pattern Recognition · Computer Science 2022-11-04 Léonard Boussioux , Tomás Giro-Larraz , Charles Guille-Escuret , Mehdi Cherti , Balázs Kégl

Plant breeding and variety trials are usually conducted in multiple environments sampled from a defined target population of environments in order to characterize the performance of breeding lines or varieties. When the population is large…

Applications · Statistics 2026-05-01 Maryna Prus , Lenka Filová , Hans-Peter Piepho , Waqas Ahmed Malik

We propose a general approach to compute the seed sensitivity, that can be applied to different definitions of seeds. It treats separately three components of the seed sensitivity problem - a set of target alignments, an associated…

Other Computer Science · Computer Science 2011-01-18 Gregory Kucherov , Laurent Noe , Mikhail Roytberg