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Polymer physics models suggest that chromatin spontaneously folds into loop networks with transcription units (TUs), such as enhancers and promoters, as anchors. Here we use combinatoric arguments to enumerate the emergent chromatin loop…

Biological Physics · Physics 2023-12-20 Andrea Bonato , Dom Corbett , Sergey Kitaev , Davide Marenduzzo , Alexander Morozov , Enzo Orlandini

Complex networks are the subject of fundamental interest from the scientific community at large. Several metrics have been introduced to characterize the structure of these networks, such as the degree distribution, degree correlation, path…

Physics and Society · Physics 2019-01-14 Francesco Sorrentino , Abu Bakar Siddique , Louis M. Pecora

Deep hedging uses recurrent neural networks to hedge financial products that cannot be fully hedged in incomplete markets. Previous work in this area focuses on minimizing some measure of quadratic hedging error by calculating pathwise…

Mathematical Finance · Quantitative Finance 2025-10-21 Alok Das , Kiseop Lee

Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor…

Molecular Networks · Quantitative Biology 2014-12-23 Jason Shulman , Frank Malatino , Alexander Mo , Killian Ryan , Gemunu H. Gunaratne

We analyze conformational properties of branched polymer structures, formed on the base of Erd\"os-R\'enyi random graph model. We consider networks with $N=5$ vertices and variable parameter $c$, that controls graph connectedness. The…

Disordered Systems and Neural Networks · Physics 2020-06-24 V. Blavatska , K. Haydukivska , Yu. Holovatch

We derive an exact representation of the topological effect on the dynamics of sequence processing neural networks within signal-to-noise analysis. A new network structure parameter, loopiness coefficient, is introduced to quantitatively…

Disordered Systems and Neural Networks · Physics 2008-05-11 Pan Zhang , Yong Chen

We consider Holder smoothness classes of surfaces for which we construct piecewise polynomial approximation networks, which are graphs with polynomial pieces as nodes and edges between polynomial pieces that are in `good continuation' of…

Methodology · Statistics 2008-12-04 Ery Arias-Castro , Boris Efros , Ofer Levi

In many areas of applied geometric/numeric computational mathematics, including geo-mapping, computer vision, computer graphics, finite element analysis, medical imaging, geometric design, and solid modeling, one has to compute incidences,…

Computational Geometry · Computer Science 2019-11-20 Alberto Paoluzzi , Vadim Shapiro , Antonio DiCarlo , Francesco Furiani , Giulio Martella , Giorgio Scorzelli

Credit networks rely on decentralized, pairwise trust relationships (channels) to exchange money or goods. Credit networks arise naturally in many financial systems, including the recent construct of payment channel networks in blockchain…

Social and Information Networks · Computer Science 2021-09-29 Vibhaalakshmi Sivaraman , Weizhao Tang , Shaileshh Bojja Venkatakrishnan , Giulia Fanti , Mohammad Alizadeh

Through detailed analysis of scores of publicly available data sets corresponding to a wide range of large-scale networks, from communication and road networks to various forms of social networks, we explore a little-studied geometric…

Physics and Society · Physics 2013-07-02 W. Sean Kennedy , Onuttom Narayan , Iraj Saniee

High order networks are weighted hypergraphs col- lecting relationships between elements of tuples, not necessarily pairs. Valid metric distances between high order networks have been defined but they are difficult to compute when the…

Social and Information Networks · Computer Science 2016-05-04 Weiyu Huang , Alejandro Ribeiro

A geometric entropy is defined as the Riemannian volume of the parameter space of a statistical manifold associated with a given network. As such it can be a good candidate for measuring networks complexity. Here we investigate its ability…

Mathematical Physics · Physics 2017-12-20 D. Felice , R. Franzosi , S. Mancini , M. Pettini

Understanding the structural complexity and predictability of complex networks is a central challenge in network science. Although recent studies have revealed a relationship between compression-based entropy and link prediction…

Social and Information Networks · Computer Science 2025-10-14 Sebastián Brzovic , Cristóbal Rojas , Andrés Abeliuk

Many physical, biological, and social phenomena can be described by cascades taking place on a network. Often, the activity can be empirically observed, but not the underlying network of interactions. In this paper we offer three…

Social and Information Networks · Computer Science 2017-07-24 Sushrut Ghonge , Dervis Can Vural

In the study of ad hoc sensor networks, clustering plays an important role in energy conservation therefore analyzing the mechanics of such topology can be helpful to make logistic decisions .Using the theory of complex network the…

Networking and Internet Architecture · Computer Science 2014-10-30 Chiranjib Patra , Samiran Chattopadhyay , Matangini Chattopadhyay , Parama Bhaumik

We study the statistical properties of the sampled scale-free networks, deeply related to the proper identification of various real-world networks. We exploit three methods of sampling and investigate the topological properties such as…

Disordered Systems and Neural Networks · Physics 2009-11-24 Sang Hoon Lee , Pan-Jun Kim , Hawoong Jeong

The interplay between the topological and geometrical properties of a polymer ring can be clarified by establishing the entanglement trapped in any portion (arc) of the ring. The task requires to close the open arcs into a ring, and the…

Soft Condensed Matter · Physics 2015-05-27 Luca Tubiana , Enzo Orlandini , Cristian Micheletti

The network topology can be described by the number of nodes and the interconnections among them. The degree of a node in a network is the number of connections it has to other nodes and the degree distribution is the probability…

Physics and Society · Physics 2014-09-19 Bin Zhou , Bing-Hong Wang , He Zhe

Different network models have been suggested for the topology underlying complex interactions in natural systems. These models are aimed at replicating specific statistical features encountered in real-world networks. However, it is rarely…

Physics and Society · Physics 2012-06-11 Stefano Cardanobile , Volker Pernice , Moritz Deger , Stefan Rotter

For many important network types (e.g., sensor networks in complex harsh environments and social networks) physical coordinate systems (e.g., Cartesian), and physical distances (e.g., Euclidean), are either difficult to discern or…

Social and Information Networks · Computer Science 2023-12-05 Anura P. Jayasumana , Randy Paffenroth , Gunjan Mahindre , Sridhar Ramasamy , Kelum Gajamannage