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Forests play a crucial role in Earth's system processes and provide a suite of social and economic ecosystem services, but are significantly impacted by human activities, leading to a pronounced disruption of the equilibrium within…

Computer Vision and Pattern Recognition · Computer Science 2024-11-01 Arthur Ouaknine , Teja Kattenborn , Etienne Laliberté , David Rolnick

The rapid global loss of biodiversity, particularly among insects, represents an urgent ecological crisis. Current methods for insect species discovery are manual, slow, and severely constrained by taxonomic expertise, hindering timely…

We introduce a new, challenging benchmark and a dataset, FungiTastic, based on fungal records continuously collected over a twenty-year span. The dataset is labelled and curated by experts and consists of about 350k multimodal observations…

Computer Vision and Pattern Recognition · Computer Science 2025-04-28 Lukas Picek , Klara Janouskova , Vojtech Cermak , Jiri Matas

Automatic identification of plant specimens from amateur photographs could improve species range maps, thus supporting ecosystems research as well as conservation efforts. However, classifying plant specimens based on image data alone is…

Computer Vision and Pattern Recognition · Computer Science 2021-10-06 Riccardo de Lutio , Yihang She , Stefano D'Aronco , Stefania Russo , Philipp Brun , Jan D. Wegner , Konrad Schindler

Camera trapping is increasingly used to monitor wildlife, but this technology typically requires extensive data annotation. Recently, deep learning has significantly advanced automatic wildlife recognition. However, current methods are…

Computer Vision and Pattern Recognition · Computer Science 2021-10-20 Zhongqi Miao , Ziwei Liu , Kaitlyn M. Gaynor , Meredith S. Palmer , Stella X. Yu , Wayne M. Getz

Deep learning has significantly advanced image analysis across diverse domains but often depends on large, annotated datasets for success. Transfer learning addresses this challenge by utilizing pre-trained models to tackle new tasks with…

Computer Vision and Pattern Recognition · Computer Science 2026-01-19 Ana Davila , Jacinto Colan , Yasuhisa Hasegawa

The LifeCLEFs plant identification task provides a testbed for a system-oriented evaluation of plant identification about 500 species trees and herbaceous plants. Seven types of image content are considered: scan and scan-like pictures of…

Computer Vision and Pattern Recognition · Computer Science 2025-09-30 Herve Goeau , Alexis Joly , Pierre Bonnet , Souheil Selmi , Jean-Francois Molino , Daniel Barthelemy , Nozha Boujemaa

Motivation: In recent years, image-based biological assays have steadily become high-throughput, sparking a need for fast automated methods to extract biologically-meaningful information from hundreds of thousands of images. Taking…

Computer Vision and Pattern Recognition · Computer Science 2021-11-25 Stanley Bryan Z. Hua , Alex X. Lu , Alan M. Moses

Data acquisition in animal ecology is rapidly accelerating due to inexpensive and accessible sensors such as smartphones, drones, satellites, audio recorders and bio-logging devices. These new technologies and the data they generate hold…

Automated identification of plants has improved considerably thanks to the recent progress in deep learning and the availability of training data. However, this profusion of data only concerns a few tens of thousands of species, while the…

Computer Vision and Pattern Recognition · Computer Science 2025-09-24 Herve Goeau , Pierre Bonnet , Alexis Joly

Understanding how biological communities respond to environmental changes is a key challenge in ecology and ecosystem management. The apparent decline of insect populations necessitates more biomonitoring but the time-consuming sorting and…

Ecosystems are governed by dynamic processes such as competition for resources, reproduction and dispersal. These shape their biodiversity and how the system responds to change. Current approaches to modelling ecosystems, especially plants,…

Quantitative Methods · Quantitative Biology 2023-03-15 Claire L. Harris , Neil Brummitt , Christina A. Cobbold , Richard Reeve

This paper introduces a novel dataset FeatherV1, containing 28,272 images of feathers categorized by 595 bird species. It was created to perform taxonomic identification of bird species by a single feather, which can be applied in amateur…

Computer Vision and Pattern Recognition · Computer Science 2020-04-21 Alina Belko , Konstantin Dobratulin , Andrey Kuznetsov

The LifeCLEF plant identification challenge aims at evaluating plant identification methods and systems at a very large scale, close to the conditions of a real-world biodiversity monitoring scenario. The 2016-th edition was actually…

Computer Vision and Pattern Recognition · Computer Science 2025-09-26 Herve Goeau , Pierre Bonnet , Alexis Joly

ImageNet-1k is a dataset often used for benchmarking machine learning (ML) models and evaluating tasks such as image recognition and object detection. Wild animals make up 27% of ImageNet-1k but, unlike classes representing people and…

Computer Vision and Pattern Recognition · Computer Science 2022-08-25 Alexandra Sasha Luccioni , David Rolnick

The fine grained classification of street trees is a crucial task for urban planning, streetscape management, and the assessment of urban ecosystem services. However, progress in this field has been hindered by the lack of large scale,…

Computer Vision and Pattern Recognition · Computer Science 2026-04-01 Jiapeng Li , Yingjing Huang , Fan Zhang , Yu liu

Many ecological questions center on complex phenomena, such as species interactions, behaviors, phenology, and responses to disturbance, that are inherently difficult to observe and sparsely documented. Community science platforms such as…

Nematode worms are one of most abundant metazoan groups on the earth, occupying diverse ecological niches. Accurate recognition or identification of nematodes are of great importance for pest control, soil ecology, bio-geography, habitat…

Quantitative Methods · Quantitative Biology 2021-03-16 Xuequan Lu , Yihao Wang , Sheldon Fung , Xue Qing

Insects are a crucial part of our ecosystem. Sadly, in the past few decades, their numbers have worryingly decreased. In an attempt to gain a better understanding of this process and monitor the insects populations, Deep Learning may offer…

Artificial Intelligence · Computer Science 2022-06-16 Teodor Chiaburu , Felix Biessmann , Frank Hausser

Knowledge of tree species distribution is fundamental to managing forests. New deep learning approaches promise significant accuracy gains for forest mapping, and are becoming a critical tool for mapping multiple tree species at scale. To…

Computer Vision and Pattern Recognition · Computer Science 2024-05-15 Charles Gaydon , Floryne Roche