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We introduce provenance networks, a novel class of neural models designed to provide end-to-end, training-data-driven explainability. Unlike conventional post-hoc methods, provenance networks learn to link each prediction directly to its…
Hierarchical knowledge structures are ubiquitous across real-world domains and play a vital role in organizing information from coarse to fine semantic levels. While such structures have been widely used in taxonomy systems, biomedical…
Tree-based networks are a class of phylogenetic networks that attempt to formally capture what is meant by "tree-like" evolution. A given non-tree-based phylogenetic network, however, might appear to be very close to being tree-based, or…
Supply chain networks are critical to the operational efficiency of industries, yet their increasing complexity presents significant challenges in mapping relationships and identifying the roles of various entities. Traditional methods for…
In the fight against hard-to-treat diseases such as cancer, it is often difficult to discover new treatments that benefit all subjects. For regulatory agency approval, it is more practical to identify subgroups of subjects for whom the…
Inspired by behavioral science, we propose Behavior Learning (BL), a novel general-purpose machine learning framework that learns interpretable and identifiable optimization structures from data, ranging from single optimization problems to…
Since Pretrained Language Models (PLMs) are the cornerstone of the most recent Information Retrieval (IR) models, the way they encode semantic knowledge is particularly important. However, little attention has been given to studying the…
Nested structure, which is non-random, controls cooperation dynamics and biodiversity in plant-animal mutualistic networks. This structural pattern has been explained in a static (non-growth) network models. However, evolutionary processes…
We propose a neural language model capable of unsupervised syntactic structure induction. The model leverages the structure information to form better semantic representations and better language modeling. Standard recurrent neural networks…
Answering range queries in the context of Local Differential Privacy (LDP) is a widely studied problem in Online Analytical Processing (OLAP). Existing LDP solutions all assume a uniform data distribution within each domain partition, which…
Matrix completion based collaborative filtering is considered scalable and effective for online service link prediction (e.g., movie recommendation) but does not meet the challenges of link prediction in ecological networks. A unique…
Knowledge Tracing (KT) models students' knowledge states based on learning interactions to predict performance. While deep learning-based KT models have boosted predictive accuracy, most models rely on deterministic vector embeddings and…
Decision-making in complex systems often relies on machine learning models, yet highly accurate models such as XGBoost and neural networks can obscure the reasoning behind their predictions. In operations research applications,…
The present study is aimed at analysing the benefits of an ontological approach in Functional Structural Plant Modelling. The ontological approach has been used at two levels, to refine the conceptual modelling approach, and to define the…
Injecting structure into neural networks enables learning functions that satisfy invariances with respect to subsets of inputs. For instance, when learning generative models using neural networks, it is advantageous to encode the…
Bayesian networks are popular probabilistic models that capture the conditional dependencies among a set of variables. Inference in Bayesian networks is a fundamental task for answering probabilistic queries over a subset of variables in…
We consider the analysis of high dimensional data given in the form of a matrix with columns consisting of observations and rows consisting of features. Often the data is such that the observations do not reside on a regular grid, and the…
Many state-of-art neural models designed for monotonicity reasoning perform poorly on downward inference. To address this shortcoming, we developed an attentive tree-structured neural network. It consists of a tree-based…
We assess advantages of expressing tree-structured Ising models via their mean parameterization rather than their commonly chosen canonical parameterization. This includes fixedness of marginal distributions, often convenient for dependence…
Causal discovery algorithms aim at untangling complex causal relationships from data. Here, we study causal discovery and inference methods based on staged tree models, which can represent complex and asymmetric causal relationships between…