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Graph classification has gained significant attention due to its applications in chemistry, social networks, and bioinformatics. While Graph Neural Networks (GNNs) effectively capture local structural patterns, they often overlook global…

Machine Learning · Computer Science 2025-12-03 Ahmet Sami Korkmaz , Selim Coskunuzer , Md Joshem Uddin

Graph Neural Networks (GNNs) have become the state-of-the-art method for many applications on graph structured data. GNNs are a model for graph representation learning, which aims at learning to generate low dimensional node embeddings that…

Machine Learning · Computer Science 2022-05-23 Davide Buffelli , Fabio Vandin

Heterogeneous graph neural networks (HGNNs) have powerful capability to embed rich structural and semantic information of a heterogeneous graph into node representations. Existing HGNNs inherit many mechanisms from graph neural networks…

Machine Learning · Computer Science 2023-09-04 Xiaocheng Yang , Mingyu Yan , Shirui Pan , Xiaochun Ye , Dongrui Fan

Spatial transcriptomics clustering is pivotal for identifying cell subpopulations by leveraging spatial location information. While recent graph-based methods modeling cell-cell interactions have improved clustering accuracy, they remain…

Machine Learning · Computer Science 2026-01-21 Chenkai Guo , Yikai Zhu , Renxiang Guan , Jinli Ma , Siwei Wang , Ke Liang , Guangdun Peng , Dayu Hu

Existing deep embedding clustering works only consider the deepest layer to learn a feature embedding and thus fail to well utilize the available discriminative information from cluster assignments, resulting performance limitation. To this…

Computer Vision and Pattern Recognition · Computer Science 2022-12-27 Zhihao Peng , Hui Liu , Yuheng Jia , Junhui Hou

Graph contrastive learning (GCL) has become a hot topic in the field of graph representation learning. In contrast to traditional supervised learning relying on a large number of labels, GCL exploits augmentation strategies to generate…

Machine Learning · Computer Science 2025-03-28 Jianqing Liang , Xinkai Wei , Min Chen , Zhiqiang Wang , Jiye Liang

Hypergraphs, with their capacity to depict high-order relationships, have emerged as a significant extension of traditional graphs. Although Graph Neural Networks (GNNs) have remarkable performance in graph representation learning, their…

Machine Learning · Computer Science 2024-11-07 Khaled Mohammed Saifuddin , Mehmet Emin Aktas , Esra Akbas

The Graph Convolutional Network (GCN) model and its variants are powerful graph embedding tools for facilitating classification and clustering on graphs. However, a major challenge is to reduce the complexity of layered GCNs and make them…

Machine Learning · Computer Science 2020-08-06 Hanqing Zeng , Hongkuan Zhou , Ajitesh Srivastava , Rajgopal Kannan , Viktor Prasanna

Graph Neural Networks (GNNs) have demonstrated remarkable effectiveness in various graph representation learning tasks. However, most existing GNNs focus primarily on capturing local information through explicit graph convolution, often…

Machine Learning · Computer Science 2025-01-31 Jinlu Wang , Yanfeng Sun , Jiapu Wang , Junbin Gao , Shaofan Wang , Jipeng Guo

Graph neural networks (GNNs) have shown the power in representation learning over graph-structured user-item interaction data for collaborative filtering (CF) task. However, with their inherently recursive message propagation among…

Information Retrieval · Computer Science 2023-03-22 Lianghao Xia , Chao Huang , Jiao Shi , Yong Xu

Graph contrastive learning (GCL) has emerged as a state-of-the-art strategy for learning representations of diverse graphs including social and biomedical networks. GCL widely uses stochastic graph topology augmentation, such as uniform…

Machine Learning · Computer Science 2024-02-22 Yucheng Wu , Leye Wang , Xiao Han , Han-Jia Ye

Graph neural networks (GNNs) have become increasingly popular in modeling graph-structured data due to their ability to learn node representations by aggregating local structure information. However, it is widely acknowledged that the test…

Machine Learning · Computer Science 2024-03-07 Donglin Xia , Xiao Wang , Nian Liu , Chuan Shi

Graph Neural Networks (GNNs) often assume strong homophily for graph classification, seldom considering heterophily, which means connected nodes tend to have different class labels and dissimilar features. In real-world scenarios, graphs…

Machine Learning · Computer Science 2024-05-10 Jiayi Yang , Sourav Medya , Wei Ye

Graph Convolutional Network (GCN) has achieved extraordinary success in learning effective task-specific representations of nodes in graphs. However, regarding Heterogeneous Information Network (HIN), existing HIN-oriented GCN methods still…

Machine Learning · Computer Science 2021-09-09 Yaming Yang , Ziyu Guan , Jianxin Li , Wei Zhao , Jiangtao Cui , Quan Wang

Many recent works have studied the performance of Graph Neural Networks (GNNs) in the context of graph homophily - a label-dependent measure of connectivity. Traditional GNNs generate node embeddings by aggregating information from a node's…

Machine Learning · Computer Science 2021-06-08 Hesham Mostafa , Marcel Nassar , Somdeb Majumdar

Graph Neural Networks (GNNs) have been widely applied to various fields due to their powerful representations of graph-structured data. Despite the success of GNNs, most existing GNNs are designed to learn node representations on the fixed…

Machine Learning · Computer Science 2021-06-14 Seongjun Yun , Minbyul Jeong , Sungdong Yoo , Seunghun Lee , Sean S. Yi , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

Graph convolutional networks (GCNs) have shown promising results in processing graph data by extracting structure-aware features. This gave rise to extensive work in geometric deep learning, focusing on designing network architectures that…

Machine Learning · Computer Science 2022-01-20 Yimeng Min , Frederik Wenkel , Guy Wolf

We propose a novel approach for visual representation learning called Signature-Graph Neural Networks (SGN). SGN learns latent global structures that augment the feature representation of Convolutional Neural Networks (CNN). SGN constructs…

Computer Vision and Pattern Recognition · Computer Science 2021-10-25 Ali Hamdi , Flora Salim , Du Yong Kim , Xiaojun Chang

Graph neural networks (GNNs) have attracted widespread attention for their impressive capability of graph representation learning. However, the increasing prevalence of large-scale graphs presents a significant challenge for GNN training…

Machine Learning · Computer Science 2025-05-13 Xinyi Gao , Hongzhi Yin , Tong Chen , Guanhua Ye , Wentao Zhang , Bin Cui

Deep graph clustering, which aims to group the nodes of a graph into disjoint clusters with deep neural networks, has achieved promising progress in recent years. However, the existing methods fail to scale to the large graph with million…

Machine Learning · Computer Science 2023-07-17 Yue Liu , Ke Liang , Jun Xia , Sihang Zhou , Xihong Yang , Xinwang Liu , Stan Z. Li
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