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Modern experiments with fundamental quantum systems - like ultracold atoms, trapped ions, single photons - are managed by a control system formed by a number of input/output electronic channels governed by a computer. In hybrid quantum…

Instrumentation and Detectors · Physics 2019-01-16 Elia Perego , Marco Pomponio , Amelia Detti , Lucia Duca , Carlo Sias , Claudio E. Calosso

The `equation-free toolbox' empowers the computer-assisted analysis of complex, multiscale systems. Its aim is to enable you to immediately use microscopic simulators to perform macro-scale system level tasks and analysis, because…

Mathematical Software · Computer Science 2020-04-08 John Maclean , J. E. Bunder , A. J. Roberts

In today's world of big data, computational analysis has become a key driver of biomedical research. Recent exponential growth in the volume of available omics data has reshaped the landscape of contemporary biology, creating demand for a…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-12-09 Jaqueline J. Brito , Thiago Mosqueiro , Jeremy Rotman , Victor Xue , Douglas J. Chapski , Juan De la Hoz , Paulo Matias , Lana Martin , Alex Zelikovsky , Matteo Pellegrinni , Serghei Mangul

We present MonteCUBES ("Monte Carlo Utility Based Experiment Simulator"), a software package designed to sample the neutrino oscillation parameter space through Markov Chain Monte Carlo algorithms. MonteCUBES makes use of the GLoBES…

High Energy Physics - Phenomenology · Physics 2009-12-04 Mattias Blennow , Enrique Fernandez-Martinez

A software system named AutoMRISimQA was developed to monitor the daily performance of a wide-bore 3T scanner(MRI) which was designed and dedicated to radiotherapy simulation. The system can monitor the performance of the MRI simulator not…

Simulations with high accuracy are an essential part of scientific research to accelerate the innovation process. They are especially useful for finding novel approaches or optimizing existing methods. Today, powerful software tools are…

Medical Physics · Physics 2022-08-31 Patrick Vogel , Martin A. Rückert , Thomas Kampf , Volker C. Behr

The scanning transmission electron microscope, a workhorse instrument in materials characterization, is being transformed into an atomic-scale material manipulation platform. With an eye on the trajectory of recent developments and the…

Applied Physics · Physics 2023-08-15 Ondrej Dyck , Andrew R. Lupini , Stephen Jesse

RNA sequencing techniques, like bulk RNA-seq and Single Cell (sc) RNA-seq, are critical tools for the biologist looking to analyze the genetic activity/transcriptome of a tissue or cell during an experimental procedure. Platforms like…

Genomics · Quantitative Biology 2024-07-08 Devam Mondal , Atharva Inamdar

High data quality is critical for reliable analytics and operational efficiency. A growing ecosystem of tools has emerged to support data quality management, ranging from lightweight open-source libraries to comprehensive enterprise…

Databases · Computer Science 2026-04-13 Tobias Rehberger , Thomas Hütter , Lisa Ehrlinger , Wolfram Wöß

We sought to develop a quantitative tool to quickly determine relative differences in MRI volumes both within and between large MR imaging cohorts (such as available in The Cancer Imaging Archive (TCIA)), in order to help determine the…

Image and Video Processing · Electrical Eng. & Systems 2021-06-09 Amir Reza Sadri , Andrew Janowczyk , Ren Zou , Ruchika Verma , Niha Beig , Jacob Antunes , Anant Madabhushi , Pallavi Tiwari , Satish E. Viswanath

Recently, many software tools have been developed to perform quantification in LC-MS analyses. However, most of them are specific to either a quantification strategy (e.g. label-free or isotopic labelling) or a mass-spectrometry system…

Quantitative Methods · Quantitative Biology 2011-09-27 Benoît Valot , Olivier Langella , Edlira Nano , Michel Zivy

Purpose: To describe the current properties and capabilities of an open-source hardware and software package that is being developed by many sites internationally with the aim of providing an inexpensive yet flexible platform for low-cost…

Increasingly sophisticated programmable quantum simulators and quantum computers are opening unprecedented opportunities for exploring and exploiting the properties of highly entangled complex quantum systems. The complexity of large…

Electrochemistry workflows utilize various instruments and computing systems to execute workflows consisting of electrocatalyst synthesis, testing and evaluation tasks. The heterogeneity of the software and hardware of these ecosystems…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-15 Anees Al-Najjar , Nageswara S. V. Rao , Craig A. Bridges , Sheng Dai , Alex Walters

In microarray technology, a number of critical steps are required to convert the raw measurements into the data relied upon by biologists and clinicians. These data manipulations, referred to as preprocessing, influence the quality of the…

Applications · Statistics 2009-09-29 Zhijin Wu , Rafael A. Irizarry

Understanding and controlling engineered quantum systems is key to developing practical quantum technology. However, given the current technological limitations, such as fabrication imperfections and environmental noise, this is not always…

Modelling complex line emission in the interstellar medium (ISM) is a degenerate, high-dimensional problem. Here, we present McFine, a tool for automated multi-component fitting of emission lines with complex hyperfine structure, in a fully…

Astrophysics of Galaxies · Physics 2024-09-11 Thomas G. Williams , Elizabeth J. Watkins

Scalable quantum technologies will present challenges for characterizing and tuning quantum devices. This is a time-consuming activity, and as the size of quantum systems increases, this task will become intractable without the aid of…

Novel concepts, perspectives and challenges in measuring and controlling an open quantum system via sequential schemes are shown. We discuss how similar protocols, relying both on repeated quantum measurements and dynamical decoupling…

Quantum Physics · Physics 2019-06-26 Stefano Gherardini , Andrea Smirne , Matthias M. Müller , Filippo Caruso

Capabilities and the number of vision-based models are increasing rapidly. And these vision models are now able to do more tasks like object detection, image classification, instance segmentation etc. with great accuracy. But models which…

Computer Vision and Pattern Recognition · Computer Science 2025-12-18 Parvesh Saini , Soumyadipta Maiti , Beena Rai