English
Related papers

Related papers: GenoTEX: An LLM Agent Benchmark for Automated Gene…

200 papers

As Large Language Models (LLMs) transition from static tools to autonomous agents, traditional evaluation benchmarks that measure performance on downstream tasks are becoming insufficient. These methods fail to capture the emergent social…

Artificial Intelligence · Computer Science 2025-10-03 Zarreen Reza

Graphs are widely used for modeling relational data in real-world scenarios, such as social networks and urban computing. Existing LLM-based graph analysis approaches either integrate graph neural networks (GNNs) for specific machine…

Artificial Intelligence · Computer Science 2025-11-04 Xin Li , Qizhi Chu , Yubin Chen , Yang Liu , Yaoqi Liu , Zekai Yu , Weize Chen , Chen Qian , Chuan Shi , Cheng Yang

We present Genie-CAT, a tool-augmented large-language-model (LLM) system designed to accelerate scientific hypothesis generation in protein design. Using metalloproteins (e.g., ferredoxins) as a case study, Genie-CAT integrates four…

Quantitative Methods · Quantitative Biology 2025-11-25 Bruno Jacob , Khushbu Agarwal , Marcel Baer , Peter Rice , Simone Raugei

Assessing the capabilities of large multimodal models (LMMs) often requires the creation of ad-hoc evaluations. Currently, building new benchmarks requires tremendous amounts of manual work for each specific analysis. This makes the…

Artificial Intelligence · Computer Science 2024-06-19 Alessandro Conti , Enrico Fini , Paolo Rota , Yiming Wang , Massimiliano Mancini , Elisa Ricci

Large language models (LLM) are perceived to offer promising potentials for automating security tasks, such as those found in security operation centers (SOCs). As a first step towards evaluating this perceived potential, we investigate the…

Cryptography and Security · Computer Science 2024-02-01 Kumar Shashwat , Francis Hahn , Xinming Ou , Dmitry Goldgof , Lawrence Hall , Jay Ligatti , S. Raj Rajgopalan , Armin Ziaie Tabari

Predicting phenotypes with complex genetic bases based on a small, interpretable set of variant features remains a challenging task. Conventionally, data-driven approaches are utilized for this task, yet the high dimensional nature of…

Machine Learning · Computer Science 2025-04-17 Joseph Lee , Shu Yang , Jae Young Baik , Xiaoxi Liu , Zhen Tan , Dawei Li , Zixuan Wen , Bojian Hou , Duy Duong-Tran , Tianlong Chen , Li Shen

Large language models (LLMs) are increasingly used as simulated participants in social science experiments, but their behavior is often unstable and highly sensitive to design choices. Prior evaluations frequently conflate base-model…

Artificial Intelligence · Computer Science 2026-02-03 Xuan Liu , Haoyang Shang , Zizhang Liu , Xinyan Liu , Yunze Xiao , Yiwen Tu , Haojian Jin

Automatic medical report generation has the potential to support clinical diagnosis, reduce the workload of radiologists, and demonstrate potential for enhancing diagnostic consistency. However, current evaluation metrics often fail to…

Computation and Language · Computer Science 2025-08-06 Zhenxuan Zhang , Kinhei Lee , Peiyuan Jing , Weihang Deng , Huichi Zhou , Zihao Jin , Jiahao Huang , Zhifan Gao , Dominic C Marshall , Yingying Fang , Guang Yang

Data governance ensures data quality, security, and compliance through policies and standards, a critical foundation for scaling modern AI development. Recently, large language models (LLMs) have emerged as a promising solution for…

Artificial Intelligence · Computer Science 2025-12-09 Zhou Liu , Zhaoyang Han , Guochen Yan , Hao Liang , Bohan Zeng , Xing Chen , Yuanfeng Song , Wentao Zhang

Large language models (LLMs) have enabled remarkable advances in automated task-solving with multi-agent systems. However, most existing LLM-based multi-agent approaches rely on predefined agents to handle simple tasks, limiting the…

Artificial Intelligence · Computer Science 2024-05-01 Guangyao Chen , Siwei Dong , Yu Shu , Ge Zhang , Jaward Sesay , Börje F. Karlsson , Jie Fu , Yemin Shi

We introduce DA-Code, a code generation benchmark specifically designed to assess LLMs on agent-based data science tasks. This benchmark features three core elements: First, the tasks within DA-Code are inherently challenging, setting them…

Computation and Language · Computer Science 2024-10-14 Yiming Huang , Jianwen Luo , Yan Yu , Yitong Zhang , Fangyu Lei , Yifan Wei , Shizhu He , Lifu Huang , Xiao Liu , Jun Zhao , Kang Liu

Large Language Models (LLMs) achieve competitive results compared to human experts in medical examinations. However, it remains a challenge to apply LLMs to complex clinical decision-making, which requires a deep understanding of medical…

While Large Language Models (LLMs) have demonstrated significant advancements in reasoning and agent-based problem-solving, current evaluation methodologies fail to adequately assess their capabilities: existing benchmarks either rely on…

Large language models (LLMs) have become important tools in solving biological problems, offering improvements in accuracy and adaptability over conventional methods. Several benchmarks have been proposed to evaluate the performance of…

Given the remarkable performance of Large Language Models (LLMs), an important question arises: Can LLMs conduct human-like scientific research and discover new knowledge, and act as an AI scientist? Scientific discovery is an iterative…

Machine Learning · Computer Science 2025-02-24 Tingting Chen , Srinivas Anumasa , Beibei Lin , Vedant Shah , Anirudh Goyal , Dianbo Liu

The emergence of agent-based systems represents a significant advancement in artificial intelligence, with growing applications in automated data extraction. However, chemical information extraction remains a formidable challenge due to the…

Modern software systems are subjected to various types of uncertainties arising from context, environment, etc. To this end, self-adaptation techniques have been sought out as potential solutions. Although recent advances in self-adaptation…

Software Engineering · Computer Science 2024-04-16 Raghav Donakanti , Prakhar Jain , Shubham Kulkarni , Karthik Vaidhyanathan

Evaluating large language models (LLMs) has recently emerged as a critical issue for safe and trustworthy application of LLMs in the medical domain. Although a variety of static medical question-answering (QA) benchmarks have been proposed,…

Computation and Language · Computer Science 2025-12-12 Gyutaek Oh , Sangjoon Park , Byung-Hoon Kim

Recently, large language model (LLM)-based agents have achieved significant success in interactive environments, attracting significant academic and industrial attention. Despite these advancements, current research predominantly focuses on…

Computation and Language · Computer Science 2025-05-22 Peng Wang , Ruihan Tao , Qiguang Chen , Mengkang Hu , Libo Qin

Large language model (LLM) agents are increasingly capable of automating components of machine learning development, yet existing biomedical benchmarks mainly focus on question answering, reasoning, and tool usage, or evaluate only narrow…

Computational Engineering, Finance, and Science · Computer Science 2026-05-18 Loka Li , Duzhen Zhang , Xingbo Du , Leonard Song , Zixiao Wang , Assanali Aukenov , Noel Thomas , Shakhnazar Sailaukan , Yonghan Yang , Feilong Chen , Jiahua Dong , Kun Zhang , Bin Zhang , Le Song
‹ Prev 1 3 4 5 6 7 10 Next ›