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Capturing semantic consistency among nodes is crucial for effective graph representation learning. Existing approaches typically rely on $k$-nearest neighbors ($k$NN) or other node-level full search algorithms (FSA) to mine semantic…

Artificial Intelligence · Computer Science 2026-05-06 Genhao Tian , Taihua Xu , Shuyin Xia , Qinghua Zhang , Jie Yang , Jianjun Chen

Learning graph-structured data with graph neural networks (GNNs) has been recently emerging as an important field because of its wide applicability in bioinformatics, chemoinformatics, social network analysis and data mining. Recent GNN…

Machine Learning · Computer Science 2021-12-16 Cheolhyeong Kim , Haeseong Moon , Hyung Ju Hwang

Subgraph-based graph representation learning (SGRL) has been recently proposed to deal with some fundamental challenges encountered by canonical graph neural networks (GNNs), and has demonstrated advantages in many important data science…

Machine Learning · Computer Science 2022-08-04 Haoteng Yin , Muhan Zhang , Yanbang Wang , Jianguo Wang , Pan Li

The quality of graph-structured data is fundamental to the success of modern graph analysis techniques such as Graph Neural Networks (GNNs). However, real-world graph data is often suboptimal, suffering from issues such as noise and…

Machine Learning · Computer Science 2026-05-19 Shen Han , Zhiyao Zhou , Jiawei Chen , Sheng Zhou , Canghong Jin , Hai Lin , Da Zhong Li , Bingde Hu , Can Wang

We propose a novel benchmarking methodology for graph neural networks (GNNs) based on the graph alignment problem, a combinatorial optimization task that generalizes graph isomorphism by aligning two unlabeled graphs to maximize overlapping…

Machine Learning · Computer Science 2025-05-20 Adrien Lagesse , Marc Lelarge

The need to identify graphs with small structural distances from a query arises in domains such as biology, chemistry, recommender systems, and social network analysis. Among several methods for measuring inter-graph distance, Graph Edit…

Machine Learning · Computer Science 2025-09-30 Aditya Bommakanti , Harshith Reddy Vonteri , Sayan Ranu , Panagiotis Karras

The computation of distance measures between nodes in graphs is inefficient and does not scale to large graphs. We explore dense vector representations as an effective way to approximate the same information: we introduce a simple yet…

Computation and Language · Computer Science 2019-06-18 Andrey Kutuzov , Mohammad Dorgham , Oleksiy Oliynyk , Chris Biemann , Alexander Panchenko

The burdensome training costs on large-scale graphs have aroused significant interest in graph condensation, which involves tuning Graph Neural Networks (GNNs) on a small condensed graph for use on the large-scale original graph. Existing…

Machine Learning · Computer Science 2024-07-19 Zhenbang Xiao , Yu Wang , Shunyu Liu , Huiqiong Wang , Mingli Song , Tongya Zheng

Graph representation learning (GRL) is a fundamental task in machine learning, aiming to encode high-dimensional graph-structured data into low-dimensional vectors. Self-supervised learning (SSL) methods are widely used in GRL because they…

Machine Learning · Computer Science 2024-11-12 Shifeng Xie , Jhony H. Giraldo

In the past few years, graph neural networks (GNNs) have become the de facto model of choice for graph classification. While, from the theoretical viewpoint, most GNNs can operate on graphs of any size, it is empirically observed that their…

Machine Learning · Computer Science 2022-10-21 Davide Buffelli , Pietro Liò , Fabio Vandin

Subgraph matching plays an important role in electronic design automation (EDA) and circuit verification. Traditional rule-based methods have limitations in generalizing to arbitrary target circuits. Furthermore, node-to-node matching…

Machine Learning · Computer Science 2025-07-29 Sangwoo Seo , Jimin Seo , Yoonho Lee , Donghyeon Kim , Hyejin Shin , Banghyun Sung , Chanyoung Park

The crux of graph classification lies in the effective representation learning for the entire graph. Typical graph neural networks focus on modeling the local dependencies when aggregating features of neighboring nodes, and obtain the…

Machine Learning · Computer Science 2024-01-02 Wenjie Pei , Weina Xu , Zongze Wu , Weichao Li , Jinfan Wang , Guangming Lu , Xiangrong Wang

Node classification is one of the hottest tasks in graph analysis. Though existing studies have explored various node representations in directed and undirected graphs, they have overlooked the distinctions of their capabilities to capture…

Machine Learning · Computer Science 2023-12-07 Seiji Maekawa , Yuya Sasaki , Makoto Onizuka

Graph Neural Networks (GNNs) are well-suited for learning on homophilous graphs, i.e., graphs in which edges tend to connect nodes of the same type. Yet, achievement of consistent GNN performance on heterophilous graphs remains an open…

Machine Learning · Computer Science 2023-08-30 Andrea Cavallo , Claas Grohnfeldt , Michele Russo , Giulio Lovisotto , Luca Vassio

Network alignment is the task of establishing one-to-one correspondences between the nodes of different graphs. Although finding a plethora of applications in high-impact domains, this task is known to be NP-hard in its general form.…

Machine Learning · Computer Science 2024-11-20 Jiashu He , Charilaos I. Kanatsoulis , Alejandro Ribeiro

Most complex machine learning and modelling techniques are prone to over-fitting and may subsequently generalise poorly to future data. Artificial neural networks are no different in this regard and, despite having a level of implicit…

Machine Learning · Statistics 2022-05-26 Vincent Szolnoky , Viktor Andersson , Balazs Kulcsar , Rebecka Jörnsten

Graph Visualization, also known as Graph Drawing, aims to find geometric embeddings of graphs that optimize certain criteria. Stress is a widely used metric; stress is minimized when every pair of nodes is positioned at their shortest path…

Computational Geometry · Computer Science 2024-02-13 Florian Grötschla , Joël Mathys , Robert Veres , Roger Wattenhofer

Graph Neural Networks (GNNs) are powerful deep learning models to generate node embeddings on graphs. When applying deep GNNs on large graphs, it is still challenging to perform training in an efficient and scalable way. We propose a novel…

Machine Learning · Computer Science 2020-10-08 Hanqing Zeng , Hongkuan Zhou , Ajitesh Srivastava , Rajgopal Kannan , Viktor Prasanna

Graph Neural Networks (GNNs) are powerful deep learning models designed for graph-structured data, demonstrating effectiveness across a wide range of applications.The softmax function is the most commonly used classifier for semi-supervised…

Machine Learning · Computer Science 2024-09-23 Yiming Yang , Jun Liu , Wei Wan

Extracting information from real-world large networks is a key challenge nowadays. For instance, computing a node centrality may become unfeasible depending on the intended centrality due to its computational cost. One solution is to…

Social and Information Networks · Computer Science 2020-11-30 Matheus R. F. Mendonça , André M. S. Barreto , Artur Ziviani