English
Related papers

Related papers: Efficient parameterization of transferable Atomic …

200 papers

Modeling distributions of covariates, or density estimation, is a core challenge in unsupervised learning. However, the majority of work only considers the joint distribution, which has limited utility in practical situations. A more…

Machine Learning · Computer Science 2021-10-28 Ryan R. Strauss , Junier B. Oliva

Finite-range numerical atomic orbitals are the basis functions of choice for several first principles methods, due to their flexibility and scalability. Generating and testing such basis sets, however, remains a significant challenge for…

Chemical Physics · Physics 2013-11-12 Fabiano Corsetti , M. -V. Fernández-Serra , José M. Soler , Emilio Artacho

In this work, we develop a framework for atomistic modeling of electronic polarizability to predict the Raman spectra of hydrogen-bonded clusters and liquids from molecular dynamics (MD) simulations. The total polarizability of the system…

Chemical Physics · Physics 2025-03-25 Atanu Paul , Ilya Grinberg

All-atom molecular dynamics has been recently proven a useful tool for the study of supramolecular polymers. While the high resolution offered by the atomistic models may allow for deep comprehension of the assembled structure, obtaining a…

Soft Condensed Matter · Physics 2018-04-20 Davide Bochicchio , Giovanni M. Pavan

We introduce an approach for the accurate calculation of thermal properties of classical nanoclusters. Based on a recently developed enhanced sampling technique, replica exchange metadynamics, the method yields the true free energy of each…

Statistical Mechanics · Physics 2011-03-07 Yingteng Zhai , Alessandro Laio , Erio Tosatti , Xin-Gao Gong

Energy functions for pure and heterogenous systems are one of the backbones for molecular simulation of condensed phase systems. With the advent of machine learned potential energy surfaces (ML-PESs) a new era has started. Statistical…

The Atomic Cluster Expansion (Drautz, Phys. Rev. B 99, 2019) provides a framework to systematically derive polynomial basis functions for approximating isometry and permutation invariant functions, particularly with an eye to modelling…

Numerical Analysis · Mathematics 2021-05-13 Genevieve Dusson , Markus Bachmayr , Gabor Csanyi , Ralf Drautz , Simon Etter , Cas van der Oord , Christoph Ortner

Long-standing challenges in cluster expansion (CE) construction include choosing how to truncate the expansion and which crystal structures to use for training. Compressive sensing (CS), which is emerging as a powerful tool for model…

Materials Science · Physics 2013-10-30 Lance J Nelson , Vidvuds Ozolins , Shane Reese , Fei Zhou , Gus L. W. Hart

We introduce Adjoint Sampling, a highly scalable and efficient algorithm for learning diffusion processes that sample from unnormalized densities, or energy functions. It is the first on-policy approach that allows significantly more…

This work presents predictive hydrodynamic simulations empowered by artificial intelligence (AI) for laser driven implosion experiments, taking the double-cone ignition (DCI) scheme as an example. A Transformer-based deep learning model…

Plasma Physics · Physics 2025-07-23 Zixu Wang , Yuhan Wang , Junfei Ma , Fuyuan Wu , Junchi Yan , Xiaohui Yuan , Zhe Zhang , Jie Zhang

Imaging of liquids and cryogenic biological materials by electron microscopy has been recently enabled by innovative approaches for specimen preparation and the fast development of optimised instruments for cryo-enabled electron microscopy…

Machine learning-based neural network potentials have the ability to provide ab initio-level predictions while reaching large length and time scales often limited to empirical force fields. Traditionally, neural network potentials rely on a…

Chemical Physics · Physics 2023-01-19 Harender S. Dhattarwal , Ang Gao , Richard C. Remsing

A comprehensive microscopic understanding of ambient liquid water is a major challenge for $ab$ $initio$ simulations as it simultaneously requires an accurate quantum mechanical description of the underlying potential energy surface (PES)…

Chemical Physics · Physics 2019-10-28 Hsin-Yu Ko , Linfeng Zhang , Biswajit Santra , Han Wang , Weinan E , Robert A. DiStasio , Roberto Car

The propensity of water to remain in a metastable liquid state at temperatures below its equilibrium melting point holds significant potential for cryopreserving biological material such as tissues and organs. The benefits conferred are a…

Materials Science · Physics 2023-12-04 Anthony N. Consiglio , Yu Ouyang , Matthew J. Powell-Palm , Boris Rubinsky

The accurate description of iron oxides/water interfaces requires reliable force field parameters that can be developed through the comparison with sophisticated quantum mechanical calculations. Here a set of CLASS2 force field parameters…

Materials Science · Physics 2021-12-07 Paulo Siani , Enrico Bianchetti , Hongsheng Liu , Cristiana Di Valentin

In this work, we report the results of a series of density functional theory (DFT) based ab initio molecular dynamics (AIMD) simulations of ambient liquid water using a hierarchy of exchange-correlation (XC) functionals to investigate the…

Soft Condensed Matter · Physics 2014-10-13 Robert A. DiStasio , Biswajit Santra , Zhaofeng Li , Xifan Wu , Roberto Car

The accuracy of molecular simulations is fundamentally limited by the interatomic potentials that govern atomic interactions. Traditional potential development, which relies heavily on ab initio calculations, frequently struggles to…

Disordered Systems and Neural Networks · Physics 2025-10-16 Ruoxia Chen , Kai Yang , Morten M. Smedskjaer , N. M. Anoop Krishnan , Jaime Marian , Fabian Rosner

To comprehend the complexities of the ice-water interface, we perform a study that attempts to correlate the altered dynamics of water to its perturbed structure at, and due to, the interface. The deviation from bulk values of structural…

Soft Condensed Matter · Physics 2019-08-02 Saumyak Mukherjee , Sayantan Mondal , Biman Bagchi

Recent advances in selected CI, including the adaptive sampling configuration interaction (ASCI) algorithm and its heat bath extension, have made the ASCI approach competitive with the most accurate techniques available, and hence an…

We perform direct large molecular dynamics simulations of homogeneous SPC/E water nucleation, using up to $\sim 4\cdot 10^6$ molecules. Our large system sizes allow us to measure extremely low and accurate nucleation rates, down to $\sim…

Atomic and Molecular Clusters · Physics 2015-09-02 R. Angelil , J. Diemand , K. Tanaka , H. Tanaka