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Natural language processing supported requirements engineering is an area of research and development that seeks to apply NLP techniques, tools and resources to a variety of requirements documents or artifacts to support a range of…

Nanopore sequencing is a widely-used high-throughput genome sequencing technology that can sequence long fragments of a genome into raw electrical signals at low cost. Nanopore sequencing requires two computationally-costly processing steps…

Automating test case specification generation is vital for improving the efficiency and accuracy of software testing, particularly in complex systems like high-performance Electronic Control Units (ECUs). This study investigates the use of…

Software Engineering · Computer Science 2025-05-02 Nikitha Medeshetty , Ahmad Nauman Ghazi , Sadi Alawadi , Fahed Alkhabbas

Post-stroke patient rehabilitation requires precise, personalized treatment plans. Natural Language Processing (NLP) offers potential to extract valuable exercise information from clinical notes, aiding in the development of more effective…

Computation and Language · Computer Science 2024-03-18 Sonish Sivarajkumar , Fengyi Gao , Parker E. Denny , Bayan M. Aldhahwani , Shyam Visweswaran , Allyn Bove , Yanshan Wang

Encoding long sequences in Natural Language Processing (NLP) is a challenging problem. Though recent pretraining language models achieve satisfying performances in many NLP tasks, they are still restricted by a pre-defined maximum length,…

Computation and Language · Computer Science 2023-05-16 Irene Li , Aosong Feng , Dragomir Radev , Rex Ying

As spiking neural networks receive more attention, we look toward applications of this computing paradigm in fields other than computer vision and signal processing. One major field, underexplored in the neuromorphic setting, is Natural…

Computation and Language · Computer Science 2024-02-01 R. Alexander Knipper , Kaniz Mishty , Mehdi Sadi , Shubhra Kanti Karmaker Santu

Natural Language Processing (NLP) has transformed various fields beyond linguistics by applying techniques originally developed for human language to the analysis of biological sequences. This review explores the application of NLP methods…

Computation and Language · Computer Science 2025-06-04 Ella Rannon , David Burstein

Clinical natural language processing (NLP) is increasingly in demand in both clinical research and operational practice. However, most of the state-of-the-art solutions are transformers-based and require high computational resources,…

Computation and Language · Computer Science 2025-04-18 Jianlin Shi , Qiwei Gan , Elizabeth Hanchrow , Annie Bowles , John Stanley , Adam P. Bress , Jordana B. Cohen , Patrick R. Alba

Context: To reduce manual effort of extracting test cases from natural-language requirements, many approaches based on Natural Language Processing (NLP) have been proposed in the literature. Given the large amount of approaches in this…

Software Engineering · Computer Science 2020-03-25 Vahid Garousi , Sara Bauer , Michael Felderer

Background: Natural Language Processing (NLP) is widely used to extract clinical insights from Electronic Health Records (EHRs). However, the lack of annotated data, automated tools, and other challenges hinder the full utilisation of NLP…

Computation and Language · Computer Science 2023-06-23 Elias Hossain , Rajib Rana , Niall Higgins , Jeffrey Soar , Prabal Datta Barua , Anthony R. Pisani , Ph. D , Kathryn Turner}

Cardiovascular diseases are becoming increasingly prevalent in modern society, with a profound impact on global health and well-being. These Cardiovascular disorders are complex and multifactorial, influenced by genetic predispositions,…

Computation and Language · Computer Science 2025-10-23 Kailai Yang , Yan Leng , Xin Zhang , Tianlin Zhang , Paul Thompson , Bernard Keavney , Maciej Tomaszewski , Sophia Ananiadou

Background: Many efforts have been put into the use of automated approaches, such as natural language processing (NLP), to mine or extract data from free-text medical records to construct comprehensive patient profiles for delivering better…

This paper investigates the application of natural language processing (NLP)-based n-gram analysis and machine learning techniques to enhance malware classification. We explore how NLP can be used to extract and analyze textual features…

Cryptography and Security · Computer Science 2026-02-24 Bishwajit Prasad Gond , Rajneekant , Pushkar Kishore , Durga Prasad Mohapatra

Objectives: The vast and complex nature of human genomic sequencing data presents challenges for effective analysis. This review aims to investigate the application of Natural Language Processing (NLP) techniques, particularly Large…

Genomics · Quantitative Biology 2025-02-28 Shuyan Cheng , Yishu Wei , Yiliang Zhou , Zihan Xu , Drew N Wright , Jinze Liu , Yifan Peng

Objective: Assessing the appropriateness of diagnostic referrals is critical for improving healthcare efficiency and reducing unnecessary procedures. However, this task becomes challenging when referral reasons are recorded only as free…

Computation and Language · Computer Science 2025-09-05 Vittorio Torri , Annamaria Bottelli , Michele Ercolanoni , Olivia Leoni , Francesca Ieva

Clinical trial eligibility matching is a critical yet often labor-intensive and error-prone step in medical research, as it ensures that participants meet precise criteria for safe and reliable study outcomes. Recent advances in Natural…

Machine Learning · Computer Science 2025-03-04 Muhammad Talha Sharif , Abdul Rehman

The rising rate of drug-related deaths in the United States, largely driven by fentanyl, requires timely and accurate surveillance. However, critical overdose data are often buried in free-text coroner reports, leading to delays and…

It is presented here a machine learning-based (ML) natural language processing (NLP) approach capable to automatically recognize and extract categorical and numerical parameters from a corpus of articles. The approach (named a.RIX) operates…

Computation and Language · Computer Science 2021-10-07 Amauri J Paula

Nanopore sequencing technologies continue to advance rapidly, offering critical benefits such as real-time analysis, the ability to sequence extremely long DNA fragments (up to millions of bases in a single read), and the option to…

Genomics · Quantitative Biology 2025-10-07 Furkan Eris , Ulysse McConnell , Can Firtina , Onur Mutlu

Objective: This review aims to analyze the application of natural language processing (NLP) techniques in cancer research using electronic health records (EHRs) and clinical notes. This review addresses gaps in the existing literature by…

Computation and Language · Computer Science 2025-02-05 Muhammad Bilal , Ameer Hamza , Nadia Malik
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