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Existing studies comparing individual-based models of growing cell populations and their continuum counterparts have mainly focused on homogeneous populations, in which all cells have the same phenotypic characteristics. However,…

Populations and Evolution · Quantitative Biology 2022-06-06 Fiona R Macfarlane , Xinran Ruan , Tommaso Lorenzi

Evolutionary dynamics is often viewed as a subtle process of change accumulation that causes a divergence among organisms and their genomes. However, this interpretation is an inheritance of a gradualistic view that has been challenged at…

Populations and Evolution · Quantitative Biology 2018-07-27 Jacobo Aguirre , Pablo Catalán , José A. Cuesta , Susanna Manrubia

The basis for most of the ideas mentioned in this paper is the theory of cellular automata. A cellular automata contains a regular grid of cells, with each cell having a pre-defined set of finite states. The initial state is determined at…

General Mathematics · Mathematics 2022-10-06 Raghavendra Bhat

We present a probabilistic 3D generative model, named Generative Cellular Automata, which is able to produce diverse and high quality shapes. We formulate the shape generation process as sampling from the transition kernel of a Markov…

Computer Vision and Pattern Recognition · Computer Science 2021-03-09 Dongsu Zhang , Changwoon Choi , Jeonghwan Kim , Young Min Kim

Evolving one-dimensional cellular automata (CAs) with genetic algorithms has provided insight into how improved performance on a task requiring global coordination emerges when only local interactions are possible. Two approaches that can…

adap-org · Physics 2007-05-23 Justin Werfel , Melanie Mitchell , James P. Crutchfield

In continual RL we want agents capable of never-ending learning, and yet our evaluation methodologies do not reflect this. The standard practice in RL is to assume unfettered access to the deployment environment for the full lifetime of the…

Machine Learning · Computer Science 2025-08-11 Golnaz Mesbahi , Parham Mohammad Panahi , Olya Mastikhina , Steven Tang , Martha White , Adam White

Cellular automata and other discrete dynamical systems have long been studied as models of emergent complexity. Recently, neural cellular automata have been proposed as models to investigate the emerge of a more general artificial…

Cellular Automata and Lattice Gases · Physics 2025-07-28 Sanyam Jain , Stefano Nichele

Environmental and genetic mutations can transform the cells in a co-operating healthy tissue into an ecosystem of individualistic tumour cells that compete for space and resources. Various selection forces are responsible for driving the…

Tissues and Organs · Quantitative Biology 2008-10-28 David Basanta , Andreas Deutsch

Unambiguous identification of the rewards driving behaviours of entities operating in complex open-ended real-world environments is difficult, partly because goals and associated behaviours emerge endogenously and are dynamically updated as…

Machine Learning · Computer Science 2024-05-03 Richard M. Bailey

Take a cellular automaton, consider that each configuration is a basis vector in some vector space, and linearize the global evolution function. If lucky, the r esult could actually make sense physically, as a valid quantum evolution; but…

Quantum Physics · Physics 2009-03-03 Pablo Arrighi , Vincent Nesme

Several modifications of the famous mathematical Game of Life are introduced by making Game of Life rules stochastic and mutual influence of cells in their 8-neighborhood on a rectangular lattice spatially non-uniform. Results are reported…

Cellular Automata and Lattice Gases · Physics 2013-05-01 Leonid Yaroslavsky

Multicellular tissues are the building blocks of many biological systems and organs. These tissues are not static, but dynamically change over time. Even if the overall structure remains the same there is a turnover of cells within the…

Tissues and Organs · Quantitative Biology 2021-02-12 Domenic P. J. Germano , James M. Osborne

A challenging simulation of evolutionary dynamics based on a three-state cellular automaton is used as a test of how cooperation can drive the evolution of complex traits. Building on the approach of Wolfram (2025), the fitness of a…

Populations and Evolution · Quantitative Biology 2025-04-08 Conor Houghton

We study locally interacting processes in discrete time, often called probabilistic cellular automata, indexed by locally finite graphs. For infinite regular trees and certain generalized Galton-Watson trees, we show that the marginal…

Probability · Mathematics 2025-10-28 Daniel Lacker , Kavita Ramanan , Ruoyu Wu

The cellular automaton (CA) pulsing model (arXiv:1806.06416) described the surprising phenomenon of spontaneous, sustained and robust rhythmic oscillations, pulsing dynamics, when random wiring is applied to a 2D `glider' rule running in a…

Cellular Automata and Lattice Gases · Physics 2021-03-02 Andrew Wuensche , Edward Coxon

Biological genotypes do not code directly for phenotypes; developmental physiology is the control layer that separates genomes from capacities ascertained by selection. A key aspect is competency, as cells are not a passive material but…

Populations and Evolution · Quantitative Biology 2022-08-01 Lakshwin Shreesha , Michael Levin

Results of experimental investigation are presented of evolutionary dynamics of several stochastic pattern formation and growth models designed by modifications of the famous mathematical Game of Life. The modifications are two-fold: Game…

Cellular Automata and Lattice Gases · Physics 2013-10-30 Leonid Yaroslavsky

Commonly studied cellular automata are memoryless and have fixed topology of connections between cells. However by allowing updates of links and short-term memory in cells we may potentially discover novel complex regimes of spatio-temporal…

Cellular Automata and Lattice Gases · Physics 2012-12-13 Ramon Alonso-Sanz , Andrew Adamatzky

The automatic design of robots has existed for 30 years but has been constricted by serial non-differentiable design evaluations, premature convergence to simple bodies or clumsy behaviors, and a lack of sim2real transfer to physical…

Robotics · Computer Science 2024-05-28 Luke Strgar , David Matthews , Tyler Hummer , Sam Kriegman

Large language model (LLM)-based evolution is a promising approach for open-ended discovery, where progress requires sustained search and knowledge accumulation. Existing methods still rely heavily on fixed heuristics and hard-coded…