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Recent years have witnessed rapid advances in graph representation learning, with the continuous embedding approach emerging as the dominant paradigm. However, such methods encounter issues regarding parameter efficiency, interpretability,…

Machine Learning · Computer Science 2026-01-22 Qika Lin , Zhen Peng , Kaize Shi , Kai He , Yiming Xu , Jian Zhang , Erik Cambria , Mengling Feng

Graph neural networks (GNNs) have achieved state-of-the-art performance for node classification on graphs. The vast majority of existing works assume that genuine node labels are always provided for training. However, there has been very…

Machine Learning · Computer Science 2021-03-08 Yayong Li , Jie yin , Ling Chen

The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challenges. Graph Neural Networks (GNNs) offer a robust framework for analyzing large-scale…

Quantitative Methods · Quantitative Biology 2024-12-23 Heming Zhang , Di Huang , Yixin Chen , Fuhai Li

Despite the strong abilities, large language models (LLMs) still suffer from hallucinations and reliance on outdated knowledge, raising concerns in knowledge-intensive tasks. Graph-based retrieval-augmented generation (GRAG) enriches LLMs…

Computation and Language · Computer Science 2026-01-14 Derong Xu , Pengyue Jia , Xiaopeng Li , Yingyi Zhang , Maolin Wang , Qidong Liu , Xiangyu Zhao , Yichao Wang , Huifeng Guo , Ruiming Tang , Enhong Chen , Tong Xu

Class imbalance is pervasive in real-world graph datasets, where the majority of annotated nodes belong to a small set of classes (majority classes), leaving many other classes (minority classes) with only a handful of labeled nodes. Graph…

Machine Learning · Computer Science 2024-12-31 Abdullah Alchihabi , Hao Yan , Yuhong Guo

Graph Neural Networks (GNNs) have become the state-of-the-art method for many applications on graph structured data. GNNs are a model for graph representation learning, which aims at learning to generate low dimensional node embeddings that…

Machine Learning · Computer Science 2022-05-23 Davide Buffelli , Fabio Vandin

Text-attributed graphs have recently garnered significant attention due to their wide range of applications in web domains. Existing methodologies employ word embedding models for acquiring text representations as node features, which are…

Machine Learning · Computer Science 2024-12-11 Jianxiang Yu , Yuxiang Ren , Chenghua Gong , Jiaqi Tan , Xiang Li , Xuecang Zhang

Large language models (LLMs) have demonstrated remarkable in-context reasoning capabilities across a wide range of tasks, particularly with unstructured inputs such as language or images. However, LLMs struggle to handle structured data,…

Machine Learning · Computer Science 2025-02-20 Jintang Li , Ruofan Wu , Yuchang Zhu , Huizhe Zhang , Liang Chen , Zibin Zheng

Inductive knowledge graph completion has been considered as the task of predicting missing triplets between new entities that are not observed during training. While most inductive knowledge graph completion methods assume that all entities…

Machine Learning · Computer Science 2023-08-21 Jaejun Lee , Chanyoung Chung , Joyce Jiyoung Whang

In federated graph learning (FGL), a complete graph is divided into multiple subgraphs stored in each client due to privacy concerns, and all clients jointly train a global graph model by only transmitting model parameters. A pain point of…

Machine Learning · Computer Science 2025-03-26 Bo Yan , Zhongjian Zhang , Huabin Sun , Mengmei Zhang , Yang Cao , Chuan Shi

Graph Neural Networks (GNNs) have become a pivotal framework for modeling graph-structured data, enabling a wide range of applications from social network analysis to molecular chemistry. By integrating large language models (LLMs),…

Machine Learning · Computer Science 2025-10-15 Bowen Fan , Zhilin Guo , Xunkai Li , Yihan Zhou , Bing Zhou , Zhenjun Li , Rong-Hua Li , Guoren Wang

Graph representation learning is a fast-growing field where one of the main objectives is to generate meaningful representations of graphs in lower-dimensional spaces. The learned embeddings have been successfully applied to perform various…

Machine Learning · Computer Science 2021-12-21 Md. Khaledur Rahman , Ariful Azad

Graph Neural Networks have demonstrated great success in various fields of multimedia. However, the distribution shift between the training and test data challenges the effectiveness of GNNs. To mitigate this challenge, Test-Time Training…

Machine Learning · Computer Science 2024-04-23 Jiaxin Zhang , Yiqi Wang , Xihong Yang , Siwei Wang , Yu Feng , Yu Shi , Ruicaho Ren , En Zhu , Xinwang Liu

In this study, we focus on the graph representation learning (a.k.a. network embedding) in attributed graphs. Different from existing embedding methods that treat the incorporation of graph structure and semantic as the simple combination…

Social and Information Networks · Computer Science 2023-05-12 Meng Qin

Self-supervised representation learning on text-attributed graphs, which aims to create expressive and generalizable representations for various downstream tasks, has received increasing research attention lately. However, existing methods…

Computation and Language · Computer Science 2023-10-24 Yichuan Li , Kaize Ding , Kyumin Lee

Large language models (LLMs) exhibit pronounced social biases. Output-level or data-optimization--based debiasing methods cannot fully resolve these biases, and many prior works have shown that biases are embedded in internal…

Computation and Language · Computer Science 2026-03-20 Zikang Ding , Junchi Yao , Junhao Li , Yi Zhang , Wenbo Jiang , Hongbo Liu , Lijie Hu

Multimodal data empowers machine learning models to better understand the world from various perspectives. In this work, we study the combination of \emph{text and graph} modalities, a challenging but understudied combination which is…

Social and Information Networks · Computer Science 2023-07-24 Yuexin Li , Bryan Hooi

Graphs provide a unified representation of semantic content and relational structure, making them a natural fit for domains such as molecular modeling, citation networks, and social graphs. Meanwhile, large language models (LLMs) have…

Machine Learning · Computer Science 2026-05-04 Haotian Xu , Yuning You , Tengfei Ma

Graph Neural Networks (GNNs) are a framework for graph representation learning, where a model learns to generate low dimensional node embeddings that encapsulate structural and feature-related information. GNNs are usually trained in an…

Machine Learning · Computer Science 2020-12-15 Davide Buffelli , Fabio Vandin

Large Language Models (LLMs) have shown strong performance on text-attributed graphs (TAGs) due to their superior semantic understanding ability on textual node features. However, their effectiveness as predictors in the low-resource…

Machine Learning · Computer Science 2026-04-13 Ruiyao Xu , Kaize Ding