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Graph neural networks (GNNs) have shown promise in addressing graph-related problems, including node classification. However, conventional GNNs assume an even distribution of data across classes, which is often not the case in real-world…

Machine Learning · Computer Science 2023-10-16 Zirui Liang , Yuntao Li , Tianjin Huang , Akrati Saxena , Yulong Pei , Mykola Pechenizkiy

Many applications in traffic, civil engineering, or electrical engineering revolve around edge-level signals. Such signals can be categorized as inherently directed, for example, the water flow in a pipe network, and undirected, like the…

Machine Learning · Computer Science 2025-03-07 Dominik Fuchsgruber , Tim Poštuvan , Stephan Günnemann , Simon Geisler

Current graph neural networks (GNNs) that tackle node classification on graphs tend to only focus on nodewise scores and are solely evaluated by nodewise metrics. This limits uncertainty estimation on graphs since nodewise marginals do not…

Machine Learning · Computer Science 2022-10-28 Hans Hao-Hsun Hsu , Yuesong Shen , Daniel Cremers

Modularity maximization is one of the state-of-the-art methods for community detection that has gained popularity in the last decade. Yet it suffers from the resolution limit problem by preferring under certain conditions large communities…

Social and Information Networks · Computer Science 2017-10-10 Xiaoyan Lu , Konstantin Kuzmin , Mingming Chen , Boleslaw K. Szymanski

Class imbalance in graph data presents a significant challenge for effective node classification, particularly in semi-supervised scenarios. In this work, we formally introduce the concept of geometric imbalance, which captures how message…

Machine Learning · Computer Science 2026-03-24 Liang Yan , Shengzhong Zhang , Bisheng Li , Menglin Yang , Chen Yang , Min Zhou , Weiyang Ding , Yutong Xie , Zengfeng Huang

We propose a novel method for topological analysis of unweighted graphs which is based on \textit{persistent homology}. The proposed method maps the input graph to a complete weighted graph where the weighting function maps each edge to a…

Algebraic Topology · Mathematics 2020-07-31 Padraig Corcoran

Classifying nodes in a graph is a common problem. The ideal classifier must adapt to any imbalances in the class distribution. It must also use information in the clustering structure of real-world graphs. Existing Graph Neural Networks…

In this work, we introduce a novel evaluation framework for generative models of graphs, emphasizing the importance of model-generated graph overlap (Chanpuriya et al., 2021) to ensure both accuracy and edge-diversity. We delineate a…

Machine Learning · Computer Science 2023-12-07 Sudhanshu Chanpuriya , Cameron Musco , Konstantinos Sotiropoulos , Charalampos Tsourakakis

Graph Neural Networks (GNNs) have shown remarkable merit in performing various learning-based tasks in complex networks. The superior performance of GNNs often correlates with the availability and quality of node-level features in the input…

Social and Information Networks · Computer Science 2023-10-20 Anwar Said , Mudassir Shabbir , Tyler Derr , Waseem Abbas , Xenofon Koutsoukos

Network embedding, which aims to learn low-dimensional representations of nodes, has been used for various graph related tasks including visualization, link prediction and node classification. Most existing embedding methods rely solely on…

Social and Information Networks · Computer Science 2019-08-22 Palash Goyal , Homa Hosseinmardi , Emilio Ferrara , Aram Galstyan

Graph neural networks (GNNs) have shown advantages in graph-based analysis tasks. However, most existing methods have the homogeneity assumption and show poor performance on heterophilic graphs, where the linked nodes have dissimilar…

Machine Learning · Computer Science 2024-04-16 Tianhao Peng , Wenjun Wu , Haitao Yuan , Zhifeng Bao , Zhao Pengrui , Xin Yu , Xuetao Lin , Yu Liang , Yanjun Pu

Adoption of recently developed methods from machine learning has given rise to creation of drug-discovery knowledge graphs (KG) that utilize the interconnected nature of the domain. Graph-based modelling of the data, combined with KG…

Machine Learning · Computer Science 2022-07-27 Stephen Bonner , Ufuk Kirik , Ola Engkvist , Jian Tang , Ian P Barrett

Many networks, such as transportation, power, and water distribution, can be represented as graphs. Crucial challenge in graph representations is identifying the importance of graph edges and their influence on overall network efficiency…

Social and Information Networks · Computer Science 2023-03-31 Debasish Jana , Sven Malama , Sriram Narasimhan , Ertugrul Taciroglu

Graph neural networks (GNNs) have received much attention recently because of their excellent performance on graph-based tasks. However, existing research on GNNs focuses on designing more effective models without considering much about the…

Machine Learning · Computer Science 2021-04-20 Han Yang , Xiao Yan , Xinyan Dai , Yongqiang Chen , James Cheng

Despite the success of graph neural network models in node classification, edge prediction (the task of predicting missing or potential links between nodes in a graph) remains a challenging problem for these models. A common approach for…

Machine Learning · Computer Science 2023-11-23 Zahed Rahmati

This paper introduces a new approach to address the issue of class imbalance in graph neural networks (GNNs) for learning on graph-structured data. Our approach integrates imbalanced node classification and Bias-Variance Decomposition,…

Machine Learning · Computer Science 2025-02-26 Liang Yan , Gengchen Wei , Chen Yang , Shengzhong Zhang , Zengfeng Huang

Real-world graphs have inherently complex and diverse topological patterns, known as topological heterogeneity. Most existing works learn graph representation in a single constant curvature space that is insufficient to match the complex…

Machine Learning · Computer Science 2024-12-17 Zihao Guo , Qingyun Sun , Haonan Yuan , Xingcheng Fu , Min Zhou , Yisen Gao , Jianxin Li

Although Graph Neural Networks (GNNs) have exhibited the powerful ability to gather graph-structured information from neighborhood nodes via various message-passing mechanisms, the performance of GNNs is limited by poor generalization and…

Machine Learning · Computer Science 2024-08-15 Zhaoliang Chen , Zhihao Wu , Ylli Sadikaj , Claudia Plant , Hong-Ning Dai , Shiping Wang , Yiu-Ming Cheung , Wenzhong Guo

Spectral graph convolutional neural networks (GCNNs) have been producing encouraging results in graph classification tasks. However, most spectral GCNNs utilize fixed graphs when aggregating node features, while omitting edge feature…

Computer Vision and Pattern Recognition · Computer Science 2022-10-06 Yang Yi , Xuequan Lu , Shang Gao , Antonio Robles-Kelly , Yuejie Zhang

Numeric values associated to edges of a knowledge graph have been used to represent uncertainty, edge importance, and even out-of-band knowledge in a growing number of scenarios, ranging from genetic data to social networks. Nevertheless,…

Artificial Intelligence · Computer Science 2021-05-19 Sumit Pai , Luca Costabello