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The extraction of molecular structures and reaction data from scientific documents is challenging due to their varied, unstructured chemical formats and complex document layouts. To address this, we introduce MolMole, a vision-based deep…

Large Language Models (LLMs) constitute a breakthrough state-of-the-art Artificial Intelligence (AI) technology which is rapidly evolving and promises to aid in medical diagnosis either by assisting doctors or by simulating a doctor's…

Academic project websites can more effectively disseminate research when they clearly present core content and enable intuitive navigation and interaction. However, current approaches such as direct Large Language Model (LLM) generation,…

Computation and Language · Computer Science 2025-10-20 Yuhang Chen , Tianpeng Lv , Siyi Zhang , Yixiang Yin , Yao Wan , Philip S. Yu , Dongping Chen

Document Question Answering (DocQA) is a very common task. Existing methods using Large Language Models (LLMs) or Large Vision Language Models (LVLMs) and Retrieval Augmented Generation (RAG) often prioritize information from a single…

Machine Learning · Computer Science 2025-03-19 Siwei Han , Peng Xia , Ruiyi Zhang , Tong Sun , Yun Li , Hongtu Zhu , Huaxiu Yao

Autonomous scientific research is significantly advanced thanks to the development of AI agents. One key step in this process is finding the right scientific literature, whether to explore existing knowledge for a research problem, or to…

Science progresses by building upon the prior body of knowledge documented in scientific publications. The acceleration of research makes it hard to stay up-to-date with the recent developments and to summarize the ever-growing body of…

Computation and Language · Computer Science 2023-11-07 Martin Funkquist , Ilia Kuznetsov , Yufang Hou , Iryna Gurevych

In recent years, the rapid advancement of Artificial Intelligence (AI) technologies, particularly Large Language Models (LLMs), has revolutionized the paradigm of scientific discovery, establishing AI-for-Science (AI4Science) as a dynamic…

Evaluating progress in large language models (LLMs) is often constrained by the challenge of verifying responses, limiting assessments to tasks like mathematics, programming, and short-form question-answering. However, many real-world…

Computation and Language · Computer Science 2026-05-19 Zhilin Wang , Jaehun Jung , Ximing Lu , Shizhe Diao , Ellie Evans , Jiaqi Zeng , Pavlo Molchanov , Yejin Choi , Jan Kautz , Yi Dong

Understanding the contents of multimodal documents is essential to accurately extract relevant evidence and use it for reasoning. Existing document understanding models tend to generate answers with a single word or phrase directly,…

Information Retrieval · Computer Science 2024-08-15 Jinxu Zhang

Large language models (LLMs) hold great promise for medical applications and are evolving rapidly, with new models being released at an accelerated pace. However, benchmarking on large-scale real-world data such as electronic health records…

Document image segmentation is crucial for document analysis and recognition but remains challenging due to the diversity of document formats and segmentation tasks. Existing methods often address these tasks separately, resulting in…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Xiao-Hui Li , Fei Yin , Cheng-Lin Liu

The understanding of large-scale scientific software poses significant challenges due to its diverse codebase, extensive code length, and target computing architectures. The emergence of generative AI, specifically large language models…

Software Engineering · Computer Science 2024-03-19 Kareem Shaik , Dali Wang , Weijian Zheng , Qinglei Cao , Heng Fan , Peter Schwartz , Yunhe Feng

Large vision-language models (LVLMs) excel across diverse tasks involving concrete images from natural scenes. However, their ability to interpret abstract figures, such as geometry shapes and scientific plots, remains limited due to a…

Computer Vision and Pattern Recognition · Computer Science 2024-06-04 Lei Li , Yuqi Wang , Runxin Xu , Peiyi Wang , Xiachong Feng , Lingpeng Kong , Qi Liu

We introduce DSCodeBench, a new benchmark designed to evaluate large language models (LLMs) on complicated and realistic data science code generation tasks. DSCodeBench consists of 1,000 carefully constructed problems sourced from realistic…

Software Engineering · Computer Science 2025-11-18 Shuyin Ouyang , Dong Huang , Jingwen Guo , Zeyu Sun , Qihao Zhu , Jie M. Zhang

Autonomous science agents built on large language models (LLMs) are increasingly used to generate hypotheses, design experiments, and produce reports. However, prior work mainly targets open-ended scientific problems with subjective outputs…

Computation and Language · Computer Science 2026-03-24 Tianshu Zhang , Huan Sun

Understanding documents with rich layouts and multi-modal components is a long-standing and practical task. Recent Large Vision-Language Models (LVLMs) have made remarkable strides in various tasks, particularly in single-page document…

Computer Vision and Pattern Recognition · Computer Science 2024-11-13 Yubo Ma , Yuhang Zang , Liangyu Chen , Meiqi Chen , Yizhu Jiao , Xinze Li , Xinyuan Lu , Ziyu Liu , Yan Ma , Xiaoyi Dong , Pan Zhang , Liangming Pan , Yu-Gang Jiang , Jiaqi Wang , Yixin Cao , Aixin Sun

How much large language models (LLMs) can aid scientific discovery, notably in assisting academic peer review, is in heated debate. Between a literature digest and a human-comparable research assistant lies their practical application…

Computation and Language · Computer Science 2025-08-19 Tianyi Li , Yu Qin , Olivia R. Liu Sheng

Large Vision-Language Models (LVLMs) show promise for scientific applications, yet open-source models still struggle with Scientific Visual Question Answering (SVQA), namely answering questions about figures from scientific papers. A key…

Computer Vision and Pattern Recognition · Computer Science 2026-02-12 Yuyi Li , Daoyuan Chen , Zhen Wang , Yutong Lu , Yaliang Li

Extracting molecular structure-activity relationships (SARs) from scientific literature and patents is essential for drug discovery and materials research. However, this task remains challenging due to heterogeneous document formats and…

Computation and Language · Computer Science 2025-10-14 Jiaxi Zhuang , Kangning Li , Jue Hou , Mingjun Xu , Zhifeng Gao , Hengxing Cai

Good software documentation encourages good software engineering, but the meaning of "good" documentation is vaguely defined in the software engineering literature. To clarify this ambiguity, we draw on work from the data and information…

Software Engineering · Computer Science 2020-09-09 Christoph Treude , Justin Middleton , Thushari Atapattu