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Many collective systems exist in nature far from equilibrium, ranging from cellular sheets up to flocks of birds. These systems reflect a form of active matter, whereby individual material components have internal energy. Under specific…

Soft Condensed Matter · Physics 2023-04-17 Namid R. Stillman , Silke Henkes , Roberto Mayor , Gilles Louppe

The aim of this paper is to leverage the free-energy principle and its corollary process theory, active inference, to develop a generic, generalizable model of the representational capacities of living creatures; that is, a theory of…

Neurons and Cognition · Quantitative Biology 2020-12-02 Maxwell J. D. Ramstead , Casper Hesp , Alec Tschantz , Ryan Smith , Axel Constant , Karl Friston

Generative models for classification use the joint probability distribution of the class variable and the features to construct a decision rule. Among generative models, Bayesian networks and naive Bayes classifiers are the most commonly…

Artificial Intelligence · Computer Science 2022-08-05 Federico Carli , Manuele Leonelli , Gherardo Varando

This chapter explores dynamical structural equation models (DSEMs) and their nonlinear generalizations into sheaves of dynamical systems. It demonstrates these two disciplines on part of the food web in the Bering Sea. The translation from…

Algebraic Topology · Mathematics 2025-11-07 Michael Robinson , Michael L. Szulczewski , James T. Thorson

In this paper, we show how the MEP hypothesis may be used to build simple climate models without representing explicitly the energy transport by the atmosphere. The purpose is twofold. First, we assess the performance of the MEP hypothesis…

Atmospheric and Oceanic Physics · Physics 2017-03-21 Corentin Herbert , Didier Paillard

Many data-driven decision problems are formulated using a nominal distribution estimated from historical data, while performance is ultimately determined by a deployment distribution that may be shifted, context-dependent, partially…

Machine Learning · Computer Science 2026-04-07 Xiuyuan Cheng , Yunqin Zhu , Yao Xie

The free energy principle (FEP), as an encompassing framework and a unified brain theory, has been widely applied to account for various problems in fields such as cognitive science, neuroscience, social interaction, and hermeneutics. As a…

Neural and Evolutionary Computing · Computer Science 2023-06-13 Jingwei Liu

Simulation of the dynamics of physical systems is essential to the development of both science and engineering. Recently there is an increasing interest in learning to simulate the dynamics of physical systems using neural networks.…

Machine Learning · Computer Science 2022-01-31 Ce Yang , Weihao Gao , Di Wu , Chong Wang

Predictive statistical mechanics is a form of inference from available data, without additional assumptions, for predicting reproducible phenomena. By applying it to systems with Hamiltonian dynamics, a problem of predicting the macroscopic…

Statistical Mechanics · Physics 2015-09-22 Domagoj Kuic

The Bayesian brain hypothesis, predictive processing and variational free energy minimisation are typically used to describe perceptual processes based on accurate generative models of the world. However, generative models need not be…

Neurons and Cognition · Quantitative Biology 2019-12-04 Manuel Baltieri , Christopher L. Buckley

Modern generative machine learning models demonstrate surprising ability to create realistic outputs far beyond their training data, such as photorealistic artwork, accurate protein structures, or conversational text. These successes…

Machine Learning · Computer Science 2024-01-17 William Gilpin

We describe a connectionist model that attempts to capture a notion of experience-based problem solving or task learning, whereby solutions to newly encountered problems are composed from remembered solutions to prior problems. We apply…

Neural and Evolutionary Computing · Computer Science 2025-05-20 Saul Kato

Biological systems commonly exhibit complex spatiotemporal patterns whose underlying generative mechanisms pose a significant analytical challenge. Traditional approaches to spatiodynamic inference rely on dimensionality reduction through…

Quantitative Methods · Quantitative Biology 2025-08-01 Jun Won Park , Kangyu Zhao , Sanket Rane

Real-world physical systems are inherently complex, often involving the coupling of multiple physics, making their simulation both highly valuable and challenging. Many mainstream approaches face challenges when dealing with decoupled data.…

Machine Learning · Computer Science 2026-01-28 Tianrun Gao , Haoren Zheng , Wenhao Deng , Haodong Feng , Tao Zhang , Ruiqi Feng , Qianyi Chen , Tailin Wu

We propose a probabilistic framework for developing computational models of biological neural systems. In this framework, physiological recordings are viewed as discrete-time partial observations of an underlying continuous-time stochastic…

Neurons and Cognition · Quantitative Biology 2026-02-10 Ahmed ElGazzar , Marcel van Gerven

The Free Energy Principle (FEP) postulates that biological agents perceive and interact with their environment in order to minimize a Variational Free Energy (VFE) with respect to a generative model of their environment. The inference of a…

Machine Learning · Statistics 2022-04-07 Thijs van de Laar , Magnus Koudahl , Bart van Erp , Bert de Vries

We introduce a generative learning framework to model high-dimensional parametric systems using gradient guidance and virtual observations. We consider systems described by Partial Differential Equations (PDEs) discretized with structured…

Machine Learning · Computer Science 2024-08-02 Han Gao , Sebastian Kaltenbach , Petros Koumoutsakos

The aim of this paper is twofold: (1) to assess whether the construct of neural representations plays an explanatory role under the variational free-energy principle and its corollary process theory, active inference; and (2) if so, to…

Neurons and Cognition · Quantitative Biology 2023-07-19 Maxwell Ramstead , Karl Friston , Ines Hipolito

Generative models are typically trained on grid-like data such as images. As a result, the size of these models usually scales directly with the underlying grid resolution. In this paper, we abandon discretized grids and instead…

Machine Learning · Computer Science 2022-02-18 Emilien Dupont , Yee Whye Teh , Arnaud Doucet

We present a new family of exchangeable stochastic processes, the Functional Neural Processes (FNPs). FNPs model distributions over functions by learning a graph of dependencies on top of latent representations of the points in the given…

Machine Learning · Computer Science 2019-11-05 Christos Louizos , Xiahan Shi , Klamer Schutte , Max Welling