English
Related papers

Related papers: BEACON: Benchmark for Comprehensive RNA Tasks and …

200 papers

Optimism for accelerating scientific discovery with AI continues to grow. Current applications of AI in scientific research range from training dedicated foundation models on scientific data to agentic autonomous hypothesis generation…

Machine Reading Comprehension (MRC) is a challenging Natural Language Processing(NLP) research field with wide real-world applications. The great progress of this field in recent years is mainly due to the emergence of large-scale datasets…

Computation and Language · Computer Science 2020-10-22 Changchang Zeng , Shaobo Li , Qin Li , Jie Hu , Jianjun Hu

Meta-learning provides a popular and effective family of methods for data-efficient learning of new tasks. However, several important issues in meta-learning have proven hard to study thus far. For example, performance degrades in…

Machine Learning · Computer Science 2021-12-03 Rui Li , Ondrej Bohdal , Rajesh Mishra , Hyeji Kim , Da Li , Nicholas Lane , Timothy Hospedales

In the last decade, the discovery of noncoding RNA(ncRNA) has exploded. Classifying these ncRNA is critical todetermining their function. This thesis proposes a new methodemploying deep convolutional neural networks (CNNs) to classifyncRNA…

Computer Vision and Pattern Recognition · Computer Science 2021-02-11 Brian McClannahan , Cucong Zhong , Guanghui Wang

Text language models have shown remarkable zero-shot capability in generalizing to unseen tasks when provided with well-formulated instructions. However, existing studies in speech processing primarily focus on limited or specific tasks.…

Referring Expression Comprehension (REC) is a vision-language task that localizes a specific image region based on a textual description. Existing REC benchmarks primarily evaluate perceptual capabilities and lack interpretable scoring…

Computer Vision and Pattern Recognition · Computer Science 2025-12-16 Tianyi Gao , Hao Li , Han Fang , Xin Wei , Xiaodong Dong , Hongbo Sun , Ye Yuan , Zhongjiang He , Jinglin Xu , Jingmin Xin , Hao Sun

Multilingual large language models (LLMs) achieve strong performance across languages, yet how language capabilities are organized at the neuron level remains poorly understood. Prior work has identified language-related neurons mainly…

Computation and Language · Computer Science 2026-03-11 Yifan Le , Yunliang Li

There is widespread optimism that frontier Large Language Models (LLMs) and LLM-augmented systems have the potential to rapidly accelerate scientific discovery across disciplines. Today, many benchmarks exist to measure LLM knowledge and…

Realistic human-centric rendering plays a key role in both computer vision and computer graphics. Rapid progress has been made in the algorithm aspect over the years, yet existing human-centric rendering datasets and benchmarks are rather…

Retrieval-Augmented Generation (RAG) has become critical for knowledge-intensive applications, yet evaluating its performance in vertical domains remains difficult due to domain complexity, diverse context scales, and heavy reliance on…

Computation and Language · Computer Science 2026-05-27 Jingbin Qian , Congwen Yi , Min Xia , Wen Wu , Jun Zhu , Jian Guan

Deep learning yields great results across many fields, from speech recognition, image classification, to translation. But for each problem, getting a deep model to work well involves research into the architecture and a long period of…

Machine Learning · Computer Science 2017-06-19 Lukasz Kaiser , Aidan N. Gomez , Noam Shazeer , Ashish Vaswani , Niki Parmar , Llion Jones , Jakob Uszkoreit

We propose Perceptual Taxonomy, a structured process of scene understanding that first recognizes objects and their spatial configurations, then infers task-relevant properties such as material, affordance, function, and physical attributes…

Computer Vision and Pattern Recognition · Computer Science 2025-11-26 Jonathan Lee , Xingrui Wang , Jiawei Peng , Luoxin Ye , Zehan Zheng , Tiezheng Zhang , Tao Wang , Wufei Ma , Siyi Chen , Yu-Cheng Chou , Prakhar Kaushik , Alan Yuille

Interpreting gene clusters from RNA sequencing (RNA-seq) remains challenging, especially in antimicrobial resistance studies where mechanistic insight is important for hypothesis generation. Existing pathway enrichment methods can summarize…

Quantitative Methods · Quantitative Biology 2026-04-03 Elias Hossain , Mehrdad Shoeibi , Ivan Garibay , Niloofar Yousefi

Tasks that require character-level reasoning, such as counting or locating characters within words, remain challenging for contemporary language models. A common conjecture is that language models' reliance on subword units, rather than…

Computation and Language · Computer Science 2026-04-08 Omri Uzan , Yuval Pinter

Machine learning is bringing a paradigm shift to healthcare by changing the process of disease diagnosis and prognosis in clinics and hospitals. This development equips doctors and medical staff with tools to evaluate their hypotheses and…

As AI-driven document understanding and processing tools become increasingly prevalent in real-world applications, the need for rigorous evaluation standards has grown increasingly urgent. Existing benchmarks and evaluations often focus on…

Reward models play an essential role in training vision-language models (VLMs) by assessing output quality to enable aligning with human preferences. Despite their importance, the research community lacks comprehensive open benchmarks for…

Computer Vision and Pattern Recognition · Computer Science 2025-02-21 Michihiro Yasunaga , Luke Zettlemoyer , Marjan Ghazvininejad

Pretraining DNA language models (DNALMs) on the full human genome is resource-intensive, yet often considered necessary for strong downstream performance. Inspired by recent findings in NLP and long-context modeling, we explore an…

Genomics · Quantitative Biology 2025-06-24 Sohan Mupparapu , Parameswari Krishnamurthy , Ratish Puduppully

Large Language Models (LLMs) ) have demonstrated promise in boosting productivity across AI-powered tools, yet existing benchmarks like Massive Multitask Language Understanding (MMLU) inadequately assess enterprise-specific task…

Artificial Intelligence · Computer Science 2025-06-26 Liya Wang , David Yi , Damien Jose , John Passarelli , James Gao , Jordan Leventis , Kang Li

The rigorous safety verification of control systems in critical applications is essential, given their increasing complexity and integration into everyday life. Simulation-based falsification approaches play a pivotal role in the safety…

Systems and Control · Electrical Eng. & Systems 2024-03-13 Joshua Yancosek , Ali Baheri