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We describe the status of the HepData database system, following a major re-development in time for the advent of LHC data. The new HepData system benefits from use of modern database and programming language technologies, as well as a…

High Energy Physics - Experiment · Physics 2015-03-17 Andy Buckley , Mike Whalley

It is well known that fraudulent reviews cast doubt on the legitimacy and dependability of online purchases. The most recent development that leads customers towards darkness is the appearance of human reviews in computer-generated (CG)…

Computation and Language · Computer Science 2025-12-01 Shabbir Anees , Anshuman , Ayush Chaurasia , Prathmesh Bogar

A suitable piece of software is presented to connect Abaqus, a sophisticated finite element package, with Matlab, the most comprehensive program for mathematical analysis. This interface between these well-known codes not only benefits from…

Mathematical Software · Computer Science 2017-11-29 George Papazafeiropoulos , Miguel Muñiz-Calvente , Emilio Martínez-Pañeda

As the performance gains from accelerating quantized matrix multiplication plateau, the softmax operation becomes the critical bottleneck in Transformer inference. This bottleneck stems from two hardware limitations: (1) limited data…

Machine Learning · Computer Science 2026-02-03 Zisheng Ye , Xiaoyu He , Maoyuan Song , Guoliang Qiu , Chao Liao , Chen Wu , Yonggang Sun , Zhichun Li , Xiaoru Xie , Yuanyong Luo , Hu Liu , Pinyan Lu , Heng Liao

The BumpHunter algorithm is widely used in the search for new particles in High Energy Physics analysis. This algorithm offers the advantage of evaluating the local and global p-values of a localized deviation in the observed data without…

High Energy Physics - Experiment · Physics 2023-10-11 Louis Vaslin , Samuel Calvet , Vincent Barra , Julien Donini

Combinatorial algorithms such as those that arise in graph analysis, modeling of discrete systems, bioinformatics, and chemistry, are often hard to parallelize. The Combinatorial BLAS library implements key computational primitives for…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-29 Ariful Azad , Oguz Selvitopi , Md Taufique Hussain , John R. Gilbert , Aydin Buluc

A good number of toolkits have been developed in Recommender Systems (RecSys) research to promote fair evaluation and reproducibility. However, recent critical examinations of RecSys evaluation protocols have raised concerns regarding the…

Information Retrieval · Computer Science 2026-04-16 Tze-Kean Ng , Joshua Teng-Khing Khoo , Aixin Sun

Reentrancy is one of the most notorious vulnerabilities in smart contracts, resulting in significant digital asset losses. However, many previous works indicate that current Reentrancy detection tools suffer from high false positive rates.…

Cryptography and Security · Computer Science 2024-02-16 Zexu Wang , Jiachi Chen , Zibin Zheng , Peilin Zheng , Yu Zhang , Weizhe Zhang

Motivation: Modern genomics laboratories generate massive volumes of sequencing data, often resulting in significant storage costs. Genomics storage consists of duplicate files, temporary processing files, and redundant intermediate data.…

Genomics · Quantitative Biology 2025-11-27 Margot Celerie , Andrew Oldfield , William Ritchie

Reactive synthesis deals with the automated construction of implementations of reactive systems from their specifications. To make the approach feasible in practice, systems engineers need effective and efficient means of debugging these…

Software Engineering · Computer Science 2014-07-22 Rüdiger Ehlers , Vasumathi Raman

Smart contracts are blockchain programs that often handle valuable assets. Writing secure smart contracts is far from trivial, and any vulnerability may lead to significant financial losses. To support developers in identifying and…

Cryptography and Security · Computer Science 2023-06-09 Monika di Angelo , Thomas Durieux , João F. Ferreira , Gernot Salzer

The main objective of this article is to develop scalable dynamic anomaly detectors when high-fidelity simulators of power systems are at our disposal. On the one hand, mathematical models of these high-fidelity simulators are typically…

Optimization and Control · Mathematics 2020-10-07 Kaikai Pan , Peter Palensky , Peyman Mohajerin Esfahani

We introduce a unified Python package for the prediction of protein biophysical properties, streamlining previous tools developed by the Bio2Byte research group. This suite facilitates comprehensive assessments of protein characteristics,…

Quantitative Methods · Quantitative Biology 2024-07-10 Jose Gavalda-Garcia , Adrian Diaz , Wim Vranken

Large biological datasets are being produced at a rapid pace and create substantial storage challenges, particularly in the domain of high-throughput sequencing (HTS). Most approaches currently used to store HTS data are either unable to…

Quantitative Methods · Quantitative Biology 2014-03-05 Fabien Campagne , Kevin C. Dorff , Nyasha Chambwe , James T. Robinson , Jill P. Mesirov , Thomas D. Wu

This paper introduces HADES, a novel tool for automatic comparative documents with similar structures. HADES is designed to streamline the work of professionals dealing with large volumes of documents, such as policy documents, legal acts,…

Code retrieval, which retrieves code snippets based on users' natural language descriptions, is widely used by developers and plays a pivotal role in real-world software development. The advent of deep learning has shifted the retrieval…

Software Engineering · Computer Science 2024-12-17 Wenchao Gu , Ensheng Shi , Yanlin Wang , Lun Du , Shi Han , Hongyu Zhang , Dongmei Zhang , Michael R. Lyu

These notes describe the most efficient hash functions currently known for hashing integers and strings. These modern hash functions are often an order of magnitude faster than those presented in standard text books. They are also simpler…

Data Structures and Algorithms · Computer Science 2020-05-12 Mikkel Thorup

MadMiner is a Python package that implements a powerful family of multivariate inference techniques that leverage matrix element information and machine learning. This multivariate approach neither requires the reduction of high-dimensional…

High Energy Physics - Experiment · Physics 2023-04-13 Irina Espejo , Sinclert Pérez , Kenyi Hurtado , Lukas Heinrich , Kyle Cranmer

Understanding the base pairing of an RNA sequence provides insight into its molecular structure.By mining suboptimal sampling data, RNAprofiling 1.0 identifies the dominant helices in low-energy secondary structures as features, organizes…

Biomolecules · Quantitative Biology 2023-03-29 Forrest Hurley , Christine Heitsch

Raw data sizes are growing and proliferating in scientific research, driven by the success of data-hungry computational methods, such as machine learning. The preponderance of proprietary and shoehorned data formats make computations slower…

Databases · Computer Science 2022-01-02 David S. Smith