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Bayesian optimization over the latent spaces of deep autoencoder models (DAEs) has recently emerged as a promising new approach for optimizing challenging black-box functions over structured, discrete, hard-to-enumerate search spaces (e.g.,…

Machine Learning · Computer Science 2023-02-24 Natalie Maus , Haydn T. Jones , Juston S. Moore , Matt J. Kusner , John Bradshaw , Jacob R. Gardner

Latent Space Bayesian Optimization (LSBO) combines generative models, typically Variational Autoencoders (VAE), with Bayesian Optimization (BO) to generate de-novo objects of interest. However, LSBO faces challenges due to the mismatch…

Machine Learning · Computer Science 2024-04-30 Onur Boyar , Ichiro Takeuchi

Simulation-based optimization of complex systems over discrete decision spaces is a challenging computational problem. Specifically, discrete decision spaces lead to a combinatorial explosion of possible alternatives, making it…

Optimization and Control · Mathematics 2025-10-17 Gabriel Hernández-Morales , Brenda Cansino-Loeza , Arturo Jiménez-Gutiérrez , Victor M. Zavala

Bayesian Optimisation (BO) is a state-of-the-art global optimisation technique for black-box problems where derivative information is unavailable, and sample efficiency is crucial. However, improving the general scalability of BO has proved…

Optimization and Control · Mathematics 2024-12-13 Luo Long , Coralia Cartis , Paz Fink Shustin

Robots have been used in all sorts of automation, and yet the design of robots remains mainly a manual task. We seek to provide design tools to automate the design of robots themselves. An important challenge in robot design automation is…

Robotics · Computer Science 2022-09-26 Jiaheng Hu , Julian Whiman , Howie Choset

We introduce a method combining variational autoencoders (VAEs) and deep metric learning to perform Bayesian optimisation (BO) over high-dimensional and structured input spaces. By adapting ideas from deep metric learning, we use label…

Bayesian optimization is a powerful method for optimizing black-box functions with limited function evaluations. Recent works have shown that optimization in a latent space through deep generative models such as variational autoencoders…

Machine Learning · Computer Science 2023-11-21 Seunghun Lee , Jaewon Chu , Sihyeon Kim , Juyeon Ko , Hyunwoo J. Kim

Optimization in the latent space of variational autoencoders is a promising approach to generate high-dimensional discrete objects that maximize an expensive black-box property (e.g., drug-likeness in molecular generation, function…

Machine Learning · Computer Science 2021-07-02 Pascal Notin , José Miguel Hernández-Lobato , Yarin Gal

Bayesian optimisation (BO) is a standard approach for sample-efficient global optimisation of expensive black-box functions, yet its scalability to high dimensions remains challenging. Here, we investigate nonlinear dimensionality reduction…

Optimization and Control · Mathematics 2025-10-20 Luo Long , Coralia Cartis , Paz Fink Shustin

Molecular design based on generative models, such as variational autoencoders (VAEs), has become increasingly popular in recent years due to its efficiency for exploring high-dimensional molecular space to identify molecules with desired…

Machine Learning · Computer Science 2024-08-13 A N M Nafiz Abeer , Nathan Urban , M Ryan Weil , Francis J. Alexander , Byung-Jun Yoon

Variational Auto-Encoder (VAE) has been widely applied as a fundamental generative model in machine learning. For complex samples like imagery objects or scenes, however, VAE suffers from the dimensional dilemma between reconstruction…

Machine Learning · Computer Science 2020-02-18 Deli Zhao , Jiapeng Zhu , Bo Zhang

Decomposition of the evidence lower bound (ELBO) objective of VAE used for density estimation revealed the deficiency of VAE for representation learning and suggested ways to improve the model. In this paper, we investigate whether we can…

Machine Learning · Computer Science 2022-11-22 Fahim Faisal Niloy , M. Ashraful Amin , AKM Mahbubur Rahman , Amin Ahsan Ali

Variational Autoencoders (VAEs) are powerful generative models for learning latent representations. Standard VAEs generate dispersed and unstructured latent spaces by utilizing all dimensions, which limits their interpretability, especially…

Computer Vision and Pattern Recognition · Computer Science 2025-05-21 Farshad Sangari Abiz , Reshad Hosseini , Babak N. Araabi

Automated Algorithm Selection (AAS) is a popular meta-algorithmic approach and has demonstrated to work well for single-objective optimisation in combination with exploratory landscape features (ELA), i.e., (numerical) descriptive features…

Neural and Evolutionary Computing · Computer Science 2026-02-03 Oliver Preuß , Jeroen Rook , Jakob Bossek , Heike Trautmann

When designing variational autoencoders (VAEs) or other types of latent space models, the dimensionality of the latent space is typically defined upfront. In this process, it is possible that the number of dimensions is under- or…

Machine Learning · Computer Science 2021-04-14 Cedric De Boom , Samuel Wauthier , Tim Verbelen , Bart Dhoedt

The high cost and data scarcity in scientific exploration have motivated the use of large language models (LLMs) as knowledge-driven components in Bayesian optimization (BO). However, existing approaches typically embed LLMs directly into…

Bayesian optimization (BO) is a leading method for optimizing expensive black-box optimization and has been successfully applied across various scenarios. However, BO suffers from the curse of dimensionality, making it challenging to scale…

Machine Learning · Computer Science 2025-04-03 Vu Viet Hoang , Hung The Tran , Sunil Gupta , Vu Nguyen

Recently, large language models (LLMs) have demonstrated remarkable potential as an intelligent agent. However, existing researches mainly focus on enhancing the agent's reasoning or decision-making abilities through well-designed prompt…

Artificial Intelligence · Computer Science 2024-04-12 Xu Huang , Weiwen Liu , Xiaolong Chen , Xingmei Wang , Defu Lian , Yasheng Wang , Ruiming Tang , Enhong Chen

We propose DoE2Vec, a variational autoencoder (VAE)-based methodology to learn optimization landscape characteristics for downstream meta-learning tasks, e.g., automated selection of optimization algorithms. Principally, using large…

Optimization and Control · Mathematics 2023-04-05 Bas van Stein , Fu Xing Long , Moritz Frenzel , Peter Krause , Markus Gitterle , Thomas Bäck

Latent space optimization (LSO) is a powerful method for designing discrete, high-dimensional biological sequences that maximize expensive black-box functions, such as wet lab experiments. This is accomplished by learning a latent space…

Machine Learning · Computer Science 2024-11-19 Thanh V. T. Tran , Nhat Khang Ngo , Viet Anh Nguyen , Truong Son Hy
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