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Particle-based shape modeling (PSM) is a popular approach to automatically quantify shape variability in populations of anatomies. The PSM family of methods employs optimization to automatically populate a dense set of corresponding…

Computer Vision and Pattern Recognition · Computer Science 2024-11-26 Hong Xu , Shireen Y. Elhabian

This paper proposes a meshless deep learning algorithm, enriched physics-informed neural networks (EPINNs), to solve dynamic Poisson-Nernst-Planck (PNP) equations with strong coupling and nonlinear characteristics. The EPINNs takes the…

Machine Learning · Computer Science 2024-02-06 Xujia Huang , Fajie Wang , Benrong Zhang , Hanqing Liu

The present paper introduces a class of finite volume schemes of increasing order of accuracy in space and time for hyperbolic systems that are in conservation form. This paper specifically focuses on Euler system that is used for modeling…

Computational Physics · Physics 2009-11-13 Dinshaw S. Balsara , Tobias Rumpf , Michael Dumbser , Claus-Dieter Munz

We propose a mesoscopic modeling framework for optimal transportation networks with biological applications. The network is described in terms of a joint probability measure on the phase space of tensor-valued conductivity and position in…

Analysis of PDEs · Mathematics 2024-01-23 Jan Haskovec , Peter Markowich , Simone Portaro

We consider numerical methods for the Poisson-Nernst-Planck-Cahn-Hilliard (PNPCH) equations with steric interactions. We propose a novel energy stable numerical scheme that respects mass conservation and positivity at the discrete level.…

Numerical Analysis · Mathematics 2021-02-03 Yiran Qian , Cheng Wang , Shenggao Zhou

We present a stochastic optimization method that uses a fourth-order regularized model to find local minima of smooth and potentially non-convex objective functions with a finite-sum structure. This algorithm uses sub-sampled derivatives…

Optimization and Control · Mathematics 2023-07-18 Aurelien Lucchi , Jonas Kohler

A new particle-based sampling and approximate inference method, based on electrostatics and Newton mechanics principles, is introduced with theoretical ground, algorithm design and experimental validation. This method simulates an…

Artificial Intelligence · Computer Science 2024-07-01 Yongchao Huang

In \cite{wang2023towards}, a dual-consistent dual-weighted residual-based $h$-adaptive method has been proposed based on a Newton-GMG framework, towards the accurate calculation of a given quantity of interest from Euler equations. The…

Numerical Analysis · Mathematics 2023-08-15 Jingfeng Wang , Guanghui Hu

In this paper, we develop a new multiphysics finite element method for a nonlinear poroelastic model with Hencky-Mises stress tensor. By introducing some new notations, we reformulate the original model into a fluid-fluid coupling problem,…

Numerical Analysis · Mathematics 2026-02-24 Yanan He , Zhihao Ge

Chemical accuracy serves as an important metric for assessing the effectiveness of the numerical method in Kohn--Sham density functional theory. It is found that to achieve chemical accuracy, not only the Kohn--Sham wavefunctions but also…

Computational Physics · Physics 2023-10-25 Yang Kuang , Yedan Shen , Guanghui Hu

We focus on the estimation of the intensity of a Poisson process in the presence of a uniform noise. We propose a kernel-based procedure fully calibrated in theory and practice. We show that our adaptive estimator is optimal from the oracle…

Methodology · Statistics 2022-06-29 Anna Bonnet , Claire Lacour , Franck Picard , Vincent Rivoirard

We introduce a novel method for the implementation of shape optimziation in fluid dynamics applications, where we propose to use the shape derivative to determine deformation fields with the help of the $p-$ Laplacian for $p > 2$. This…

Optimization and Control · Mathematics 2021-03-30 Peter Marvin Müller , Niklas Kühl , Martin Siebenborn , Klaus Deckelnick , Michael Hinze , Thomas Rung

This work establishes a general stochastic maximum principle for partially observed optimal control of semi-linear stochastic partial differential equations in a nonconvex control domain. The state evolves in a Hilbert space driven by a…

Optimization and Control · Mathematics 2025-04-22 Yanzhao Cao , Hongjiang Qian , George Yin

The paper presents a new method for shape and topology optimization based on an efficient and scalable boundary integral formulation for elasticity. To optimize topology, our approach uses iterative extraction of isosurfaces of a…

Optimization and Control · Mathematics 2016-12-14 Igor Ostanin , Ivan Tsybulin , Mikhail Litsarev , Ivan Oseledets , Denis Zorin

We apply a recently developed framework for analyzing the convergence of stochastic algorithms to the general problem of large-scale nonconvex composite optimization more generally, and nonconvex likelihood maximization in particular. Our…

Optimization and Control · Mathematics 2024-01-25 D. Russell Luke , Steffen Schultze , Helmut Grubmüller

This work is devoted to the study of a fully discrete scheme for a repulsive chemotaxis with quadratic production model. By following the ideas presented in [Guilen-Gonzalez et al], we introduce an auxiliary variable (the gradient of the…

Numerical Analysis · Mathematics 2020-03-06 F. Guillén-González , M. A. Rodríguez-Bellido , D. A. Rueda-Gómez

The Poisson-Nernst-Planck (PNP) system is a standard model for describing ion transport. In many applications, e.g., ions in biological tissues, the presence of thin boundary layers poses both modelling and computational challenges. In this…

Biological Physics · Physics 2018-09-12 Zilong Song , Xiulei Cao , Huaxiong Huang

We develop a method for optimization in shape spaces, i.e., sets of surfaces modulo re-parametrization. Unlike previously proposed gradient flows, we achieve superlinear convergence rates through a subtle approximation of the shape Hessian,…

Computer Vision and Pattern Recognition · Computer Science 2014-04-15 J. Balzer , S. Soatto

Computational design optimization in fluid dynamics usually requires to solve non-linear partial differential equations numerically. In this work, we explore a Bayesian optimization approach to minimize an object's drag coefficient in…

Computational Engineering, Finance, and Science · Computer Science 2017-12-12 Stephan Eismann , Stefan Bartzsch , Stefano Ermon

Adjoint-based shape optimization most often relies on Eulerian flow field formulations. However, since Lagrangian particle methods are the natural choice for solving sedimentation problems in oceanography, extensions to the Lagrangian…

Fluid Dynamics · Physics 2022-09-07 Luka Schlegel , Volker Schulz