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UMAP (Uniform Manifold Approximation and Projection) is a novel manifold learning technique for dimension reduction. UMAP is constructed from a theoretical framework based in Riemannian geometry and algebraic topology. The result is a…

Machine Learning · Statistics 2020-09-21 Leland McInnes , John Healy , James Melville

With the proliferation of Graph Neural Network (GNN) methods stemming from contrastive learning, unsupervised node representation learning for graph data is rapidly gaining traction across various fields, from biology to molecular dynamics,…

Machine Learning · Computer Science 2024-08-01 Jihee You , So Won Jeong , Claire Donnat

Non-linear dimensionality reduction can be performed by \textit{manifold learning} approaches, such as Stochastic Neighbour Embedding (SNE), Locally Linear Embedding (LLE) and Isometric Feature Mapping (ISOMAP). These methods aim to produce…

Machine Learning · Statistics 2021-12-09 Theodoulos Rodosthenous , Vahid Shahrezaei , Marina Evangelou

Uniform Manifold Approximation and Projection (UMAP) is a widely used manifold learning technique for dimensionality reduction. This paper studies UMAP, supervised UMAP, and several competing dimensionality reduction methods, including…

Machine Learning · Computer Science 2026-05-04 Guanzhe Zhang , Shanshan Ding , Zhezhen Jin

We present a new nonlinear dimensionality reduction method, MAPLE, that enhances UMAP by improving manifold modeling. MAPLE employs a self-supervised learning approach to more efficiently encode low-dimensional manifold geometry. Central to…

Machine Learning · Computer Science 2026-05-15 Zeyang Huang , Takanori Fujiwara , Angelos Chatzimparmpas , Wandrille Duchemin , Andreas Kerren

Manifold learning is a hot research topic in the field of computer science and has many applications in the real world. A main drawback of manifold learning methods is, however, that there is no explicit mappings from the input data…

Computer Vision and Pattern Recognition · Computer Science 2010-01-18 Hong Qiao , Peng Zhang , Di Wang , Bo Zhang

A fundamental problem in supervised learning is to find a good set of features or distance measures. If the new set of features is of lower dimensionality and can be obtained by a simple transformation of the original data, they can make…

Machine Learning · Computer Science 2024-05-15 Anri Patron , Ayush Prasad , Hoang Phuc Hau Luu , Kai Puolamäki

Existing methods for explaining black box learning models often focus on building local explanations of model behaviour for a particular data item. It is possible to create global explanations for all data items, but these explanations…

Machine Learning · Computer Science 2023-10-16 Anton Björklund , Jarmo Mäkelä , Kai Puolamäki

Dimensionality reduction methods are employed to decrease data dimensionality, either to enhance machine learning performance or to facilitate data visualization in two or three-dimensional spaces. These methods typically fall into two…

Machine Learning · Computer Science 2025-08-26 Berat Dogan

Uniform Manifold Approximation and Projection (UMAP) is one of the state-of-the-art methods for dimensionality reduction and data visualization. This is a tutorial and survey paper on UMAP and its variants. We start with UMAP algorithm…

Human-Computer Interaction · Computer Science 2021-09-07 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

UMAP is a non-parametric graph-based dimensionality reduction algorithm using applied Riemannian geometry and algebraic topology to find low-dimensional embeddings of structured data. The UMAP algorithm consists of two steps: (1) Compute a…

Machine Learning · Computer Science 2021-08-31 Tim Sainburg , Leland McInnes , Timothy Q Gentner

Manifold learning approaches seek the intrinsic, low-dimensional data structure within a high-dimensional space. Mainstream manifold learning algorithms, such as Isomap, UMAP, $t$-SNE, Diffusion Map, and Laplacian Eigenmaps do not use data…

Machine Learning · Statistics 2023-07-04 Jake S. Rhodes

Manifold learning (ML) aims to seek low-dimensional embedding from high-dimensional data. The problem is challenging on real-world datasets, especially with under-sampling data, and we find that previous methods perform poorly in this case.…

Machine Learning · Computer Science 2022-07-27 Zelin Zang , Siyuan Li , Di Wu , Ge Wang , Lei Shang , Baigui Sun , Hao Li , Stan Z. Li

Manifold learning offers nonlinear dimensionality reduction of high-dimensional datasets. In this paper, we bring geometry processing to bear on manifold learning by introducing a new approach based on metric connection for generating a…

Machine Learning · Computer Science 2018-11-05 Max Budninskiy , Glorian Yin , Leman Feng , Yiying Tong , Mathieu Desbrun

Manifold learning techniques for nonlinear dimension reduction assume that high-dimensional feature vectors lie on a low-dimensional manifold, then attempt to exploit manifold structure to obtain useful low-dimensional Euclidean…

Machine Learning · Statistics 2021-10-25 Michael W. Trosset , Gokcen Buyukbas

Manifold learning based methods have been widely used for non-linear dimensionality reduction (NLDR). However, in many practical settings, the need to process streaming data is a challenge for such methods, owing to the high computational…

Machine Learning · Statistics 2018-03-20 Suchismit Mahapatra , Varun Chandola

Analyzing high-dimensional data presents challenges due to the "curse of dimensionality'', making computations intensive. Dimension reduction techniques, categorized as linear or non-linear, simplify such data. Non-linear methods are…

Machine Learning · Statistics 2025-04-15 Praveen T. W. Hettige , Benjamin W. Ong

Supervised manifold learning methods learn data representations by preserving the geometric structure of data while enhancing the separation between data samples from different classes. In this work, we propose a theoretical study of…

Machine Learning · Computer Science 2018-01-08 Elif Vural , Christine Guillemot

Streaming adaptations of manifold learning based dimensionality reduction methods, such as Isomap, are based on the assumption that a small initial batch of observations is enough for exact learning of the manifold, while remaining…

Machine Learning · Statistics 2020-07-20 Suchismit Mahapatra , Varun Chandola

Nonlinear dimensionality reduction methods have demonstrated top-notch performance in many pattern recognition and image classification tasks. Despite their popularity, they suffer from highly expensive time and memory requirements, which…

Computational Geometry · Computer Science 2014-04-08 Amir Najafi , Amir Joudaki , Emad Fatemizadeh
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