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Storing tabular data to balance storage and query efficiency is a long-standing research question in the database community. In this work, we argue and show that a novel DeepMapping abstraction, which relies on the impressive memorization…

Databases · Computer Science 2024-09-27 Lixi Zhou , K. Selçuk Candan , Jia Zou

Predicting and enhancing inherent properties based on molecular structures is paramount to design tasks in medicine, materials science, and environmental management. Most of the current machine learning and deep learning approaches have…

Machine Learning · Computer Science 2024-04-08 Zachary R. Fox , Ayana Ghosh

Selecting appropriate inductive biases is an essential step in the design of machine learning models, especially when working with audio, where even short clips may contain millions of samples. To this end, we propose the combolutional…

Sound · Computer Science 2025-08-06 Cameron Churchwell , Minje Kim , Paris Smaragdis

Knee osteoporosis weakens the bone tissue in the knee joint, increasing fracture risk. Early detection through X-ray images enables timely intervention and improved patient outcomes. While some researchers have focused on diagnosing knee…

Image and Video Processing · Electrical Eng. & Systems 2024-12-13 Ayesha Siddiqua , Rakibul Hasan , Anichur Rahman , Abu Saleh Musa Miah

We present BioLangFusion, a simple approach for integrating pre-trained DNA, mRNA, and protein language models into unified molecular representations. Motivated by the central dogma of molecular biology (information flow from gene to…

Machine Learning · Computer Science 2025-06-11 Amina Mollaysa , Artem Moskale , Pushpak Pati , Tommaso Mansi , Mangal Prakash , Rui Liao

We present a highly efficient molecular dynamics scheme for calculating the concentration depth profile of dopants in ion irradiated materials. The scheme incorporates several methods for reducing the computational overhead, plus a rare…

Computational Physics · Physics 2009-10-31 Keith M. Beardmore , Niels Gronbech-Jensen

Molecular representation learning is pivotal for various molecular property prediction tasks related to drug discovery. Robust and accurate benchmarks are essential for refining and validating current methods. Existing molecular property…

Chemical Physics · Physics 2024-06-27 Shikun Feng , Jiaxin Zheng , Yinjun Jia , Yanwen Huang , Fengfeng Zhou , Wei-Ying Ma , Yanyan Lan

We explored the Protein DataBank (PDB) to collect protein-ssDNA structures and create a multiconformational docking benchmark including both bound and unbound protein structures. Due to ssDNA high flexibility when not bound, no ssDNA…

Quantitative Methods · Quantitative Biology 2022-10-21 Dominique Mias-Lucquin , Isaure Chauvot de Beauchene

Keypoint detection is the foundation of many computer vision tasks, including image registration, structure-from-motion, 3D reconstruction, visual odometry, and SLAM. Traditional detectors (SIFT, ORB, BRISK, FAST, etc.) and learning-based…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Shaharyar Ahmed Khan Tareen , Filza Khan Tareen , Xiaojing Yuan

We present SpineTrack, the first comprehensive dataset for 2D spine pose estimation in unconstrained settings, addressing a crucial need in sports analytics, healthcare, and realistic animation. Existing pose datasets often simplify the…

Computer Vision and Pattern Recognition · Computer Science 2025-04-14 Muhammad Saif Ullah Khan , Stephan Krauß , Didier Stricker

Principal component analysis (PCA) frequently suffers from the disturbance of outliers and thus a spectrum of robust extensions and variations of PCA have been developed. However, existing extensions of PCA treat all samples equally even…

Machine Learning · Computer Science 2021-03-23 Rui Zhang , Hongyuan Zhang , Xuelong Li

Referring Expression Comprehension (REC) is a foundational cross-modal task that evaluates the interplay of language understanding, image comprehension, and language-to-image grounding. It serves as an essential testing ground for…

Computer Vision and Pattern Recognition · Computer Science 2025-06-16 Xuzheng Yang , Junzhuo Liu , Peng Wang , Guoqing Wang , Yang Yang , Heng Tao Shen

Anatomical landmark correspondences in medical images can provide additional guidance information for the alignment of two images, which, in turn, is crucial for many medical applications. However, manual landmark annotation is…

Computer Vision and Pattern Recognition · Computer Science 2020-04-09 Monika Grewal , Timo M. Deist , Jan Wiersma , Peter A. N. Bosman , Tanja Alderliesten

The widespread application of multimodal machine learning models like GPT-4 has revolutionized various research fields including computer vision and natural language processing. However, its implementation in materials informatics remains…

Materials Science · Physics 2023-09-12 Sheng Gong , Shuo Wang , Taishan Zhu , Yang Shao-Horn , Jeffrey C. Grossman

Predicting fracture load in laminated composites with stress raisers is challenging due to complex failure mechanisms such as delamination, fibre breakage, and matrix cracking, which are heavily influenced by fibre orientation, layup…

Computational Physics · Physics 2025-10-20 Amir Mohammad Mirzaei

Accurate prediction of protein-ligand binding poses is crucial for structure-based drug design, yet existing methods struggle to balance speed, accuracy, and physical plausibility. We introduce Matcha, a novel molecular docking pipeline…

Reliable evaluation of protein structure predictions remains challenging, as metrics like pLDDT capture energetic stability but often miss subtle errors such as atomic clashes or conformational traps reflecting topological frustration…

Multimodal representation is faithful and highly effective in describing real-world data samples' characteristics by describing their complementary information. However, the collected data often exhibits incomplete and misaligned…

Machine Learning · Computer Science 2025-07-08 Shubin Ma , Liang Zhao , Mingdong Lu , Yifan Guo , Bo Xu

Data Assimilation is a cornerstone of atmospheric system modeling, tasked with reconstructing system states by integrating sparse, noisy observations with prior estimation. While traditional approaches like variational and ensemble Kalman…

Machine Learning · Computer Science 2025-11-04 Hao Wang , Zixuan Weng , Jindong Han , Wei Fan , Hao Liu

Robustness of deep neural networks to input noise remains a critical challenge, as naive noise injection often degrades accuracy on clean (uncorrupted) data. We propose a novel training framework that addresses this trade-off through two…

Machine Learning · Statistics 2026-01-06 Hai-Vy Nguyen , Fabrice Gamboa , Sixin Zhang , Reda Chhaibi , Serge Gratton , Thierry Giaccone