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Inexpensive machine learning potentials are increasingly being used to speed up structural optimization and molecular dynamics simulations of materials by iteratively predicting and applying interatomic forces. In these settings, it is…

Chemical Physics · Physics 2023-09-12 Jonas Busk , Mikkel N. Schmidt , Ole Winther , Tejs Vegge , Peter Bjørn Jørgensen

To address the increasing need for efficient and accurate content moderation, we propose an efficient and lightweight deep classification ensemble structure. Our approach is based on a combination of simple visual features, designed for…

Computer Vision and Pattern Recognition · Computer Science 2023-09-12 Mohammad Hosseini , Mahmudul Hasan

Deep learning has emerged as a technique of choice for rapid feature extraction across imaging disciplines, allowing rapid conversion of the data streams to spatial or spatiotemporal arrays of features of interest. However, applications of…

Data Analysis, Statistics and Probability · Physics 2021-01-25 Ayana Ghosh , Bobby G. Sumpter , Ondrej Dyck , Sergei V. Kalinin , Maxim Ziatdinov

We present local ensembles, a method for detecting underspecification -- when many possible predictors are consistent with the training data and model class -- at test time in a pre-trained model. Our method uses local second-order…

Machine Learning · Computer Science 2021-12-09 David Madras , James Atwood , Alex D'Amour

The development of efficient machine learning models for molecular systems representation is becoming crucial in scientific research. We introduce TensorNet, an innovative O(3)-equivariant message-passing neural network architecture that…

Machine Learning · Computer Science 2023-10-31 Guillem Simeon , Gianni de Fabritiis

Prediction of molecular properties, including physico-chemical properties, is a challenging task in chemistry. Herein we present a new state-of-the-art multitask prediction method based on existing graph neural network models. We have used…

Machine Learning · Computer Science 2019-10-31 Fabio Capela , Vincent Nouchi , Ruud Van Deursen , Igor V. Tetko , Guillaume Godin

While there is a general focus on predictions of values, mathematically more appropriate is prediction of probability distributions: with additional possibilities like prediction of uncertainty, higher moments and quantiles. For the purpose…

Biomolecules · Quantitative Biology 2022-07-25 Jarek Duda , Sabina Podlewska

Fine-tuning BERT-based models is resource-intensive in memory, computation, and time. While many prior works aim to improve inference efficiency via compression techniques, e.g., pruning, these works do not explicitly address the…

Computation and Language · Computer Science 2022-08-04 Danilo Vucetic , Mohammadreza Tayaranian , Maryam Ziaeefard , James J. Clark , Brett H. Meyer , Warren J. Gross

Pre-trained BERT models have achieved impressive accuracy on natural language processing (NLP) tasks. However, their excessive amount of parameters hinders them from efficient deployment on edge devices. Binarization of the BERT models can…

Computation and Language · Computer Science 2023-05-10 Jiayi Tian , Chao Fang , Haonan Wang , Zhongfeng Wang

Contextualized representations trained over large raw text data have given remarkable improvements for NLP tasks including question answering and reading comprehension. There have been works showing that syntactic, semantic and word sense…

Computation and Language · Computer Science 2021-02-12 Xuhui Zhou , Yue Zhang , Leyang Cui , Dandan Huang

Ensemble learning has proven effective in boosting predictive performance, but traditional methods such as bagging, boosting, and dynamic ensemble selection (DES) suffer from high computational cost and limited adaptability to heterogeneous…

The limited extrapolative power of structure-based machine learning (ML) models is a critical bottleneck in chemical discovery, particularly for industrial R&D, where navigating uncharted chemical space to find next-generation materials or…

Chemists in search of structure-property relationships face great challenges due to limited high quality, concordant datasets. Machine learning (ML) has significantly advanced predictive capabilities in chemical sciences, but these modern…

Machine Learning · Computer Science 2025-09-18 Yulia Pimonova , Michael G. Taylor , Alice Allen , Ping Yang , Nicholas Lubbers

Ensemble methods for supervised machine learning have become popular due to their ability to accurately predict class labels with groups of simple, lightweight "base learners." While ensembles offer computationally efficient models that…

Machine Learning · Statistics 2011-09-01 Orianna DeMasi , Juan Meza , David H. Bailey

Pre-trained Language Models have emerged as promising tools for predicting molecular properties, yet their development is in its early stages, necessitating further research to enhance their efficacy and address challenges such as…

Machine Learning · Computer Science 2023-10-24 Eduardo Soares , Akihiro Kishimoto , Emilio Vital Brazil , Seiji Takeda , Hiroshi Kajino , Renato Cerqueira

We introduce a machine learning method in which energy solutions from the Schrodinger equation are predicted using symmetry adapted atomic orbitals features and a graph neural-network architecture. \textsc{OrbNet} is shown to outperform…

Machine learning techniques paired with the availability of massive datasets dramatically enhance our ability to explore the chemical compound space by providing fast and accurate predictions of molecular properties. However, learning on…

Neural methods of molecule property prediction require efficient encoding of structure and property relationship to be accurate. Recent work using graph algorithms shows limited generalization in the latent molecule encoding space. We build…

Quantitative Methods · Quantitative Biology 2020-11-26 Prateeth Nayak , Andrew Silberfarb , Ran Chen , Tulay Muezzinoglu , John Byrnes

Modern computational organic chemistry is becoming increasingly data-driven. There remain a large number of important unsolved problems in this area such as product prediction given reactants, drug discovery, and metric-optimized molecule…

Biomolecules · Quantitative Biology 2026-02-10 Josh Payne , Mario Srouji , Dian Ang Yap , Vineet Kosaraju

Few-shot learning has been proposed and rapidly emerging as a viable means for completing various tasks. Many few-shot models have been widely used for relation learning tasks. However, each of these models has a shortage of capturing a…

Computation and Language · Computer Science 2021-05-26 Qing Lin , Yongbin Liu , Wen Wen , Zhihua Tao