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Bayesian optimization (BO) is a powerful framework for optimizing expensive black-box objectives, yet extending it to graph-structured domains remains challenging due to the discrete and combinatorial nature of graphs. Existing approaches…

Machine Learning · Computer Science 2025-11-12 Shu Hong , Yongsheng Mei , Mahdi Imani , Tian Lan

Distributed systems that manage and process graph-structured data internally solve a graph partitioning problem to minimize their communication overhead and query run-time. Besides computational complexity -- optimal graph partitioning is…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-24 Ruben Mayer , Hans-Arno Jacobsen

Due to their capacity to encode rich structural information, labeled graphs are often used for modeling various kinds of objects such as images, molecules, and chemical compounds. If pattern recognition problems such as clustering and…

Data Structures and Algorithms · Computer Science 2019-08-02 David B. Blumenthal

Graph embedding methods produce unsupervised node features from graphs that can then be used for a variety of machine learning tasks. Modern graphs, particularly in industrial applications, contain billions of nodes and trillions of edges,…

Machine Learning · Computer Science 2019-12-05 Adam Lerer , Ledell Wu , Jiajun Shen , Timothee Lacroix , Luca Wehrstedt , Abhijit Bose , Alex Peysakhovich

Graph embedding aims to transfer a graph into vectors to facilitate subsequent graph analytics tasks like link prediction and graph clustering. Most approaches on graph embedding focus on preserving the graph structure or minimizing the…

Machine Learning · Computer Science 2020-03-04 Shirui Pan , Ruiqi Hu , Sai-fu Fung , Guodong Long , Jing Jiang , Chengqi Zhang

Graph neural networks (GNNs) emerge as a powerful approach to process non-euclidean data structures and have been proved powerful in various application domains such as social networks and e-commerce. While such graph data maintained in…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-04-06 Shengwen Liang , Ying Wang , Cheng Liu , Lei He , Huawei Li , Xiaowei Li

Recent advances in data processing have stimulated the demand for learning graphs of very large scales. Graph Neural Networks (GNNs), being an emerging and powerful approach in solving graph learning tasks, are known to be difficult to…

Machine Learning · Computer Science 2023-06-02 Ningyi Liao , Dingheng Mo , Siqiang Luo , Xiang Li , Pengcheng Yin

Autoencoders are effective deep learning models that can function as generative models and learn latent representations for downstream tasks. The use of graph autoencoders - with both encoder and decoder implemented as message passing…

Machine Learning · Computer Science 2025-03-04 Magnus Cunow , Gerrit Großmann

We introduce a novel data reconstruction algorithm known as Gappy auto-encoder (Gappy AE) to address the limitations associated with Gappy proper orthogonal decomposition (Gappy POD), a widely used method for data reconstruction when…

Computational Physics · Physics 2025-11-06 Youngkyu Kim , Youngsoo Choi , Byounghyun Yoo

Learning to predict properties of large graphs is challenging because each prediction requires the knowledge of an entire graph, while the amount of memory available during training is bounded. Here we propose Graph Segment Training (GST),…

Our goal is to efficiently compute low-dimensional latent coordinates for nodes in an input graph -- known as graph embedding -- for subsequent data processing such as clustering. Focusing on finite graphs that are interpreted as uniform…

Signal Processing · Electrical Eng. & Systems 2022-03-08 Fei Chen , Gene Cheung , Xue Zhang

Understanding how a vertex relates to a set of vertices is a fundamental task in graph analysis. Given a graph $G$ and a vertex set $X \subseteq V(G)$, consider the collection of subsets of the form $N(u) \cap X$ where $u$ ranges over all…

Data Structures and Algorithms · Computer Science 2025-12-01 Christine Awofeso , Pål Grønås Drange , Patrick Greaves , Oded Lachish , Felix Reidl

Spectral graph embedding plays a critical role in graph representation learning by generating low-dimensional vector representations from graph spectral information. However, the embedding space of traditional spectral embedding methods…

Machine Learning · Computer Science 2026-05-19 Changjie Sheng , Zhichao Zhang , Yangfan He

Current applications have produced graphs on the order of hundreds of thousands of nodes and millions of edges. To take advantage of such graphs, one must be able to find patterns, outliers and communities. These tasks are better performed…

Social and Information Networks · Computer Science 2015-05-29 Jose F. Rodrigues , Hanghang Tong , Jia-Yu Pan , Agma J. M. Traina , Caetano Traina , Christos Faloutsos

Node classifiers are required to comprehensively reduce prediction errors, training resources, and inference latency in the industry. However, most graph neural networks (GNN) concentrate only on one or two of them. The compromised aspects…

Machine Learning · Computer Science 2023-06-01 Yi Luo , Guangchun Luo , Ke Qin , Aiguo Chen

Graph embedding has been widely applied in areas such as network analysis, social network mining, recommendation systems, and bioinformatics. However, current graph construction methods often require the prior definition of neighborhood…

Machine Learning · Computer Science 2025-10-08 S. Peng , L. Hu , W. Zhang , B. Jie , Y. Luo

Attributed graph clustering, which aims to group the nodes of an attributed graph into disjoint clusters, has made promising advancements in recent years. However, most existing methods face challenges when applied to large graphs due to…

Machine Learning · Computer Science 2024-08-13 Yunhui Liu , Tieke He , Qing Wu , Tao Zheng , Jianhua Zhao

Graph kernels are widely used for measuring the similarity between graphs. Many existing graph kernels, which focus on local patterns within graphs rather than their global properties, suffer from significant structure information loss when…

Machine Learning · Computer Science 2019-12-02 Lingfei Wu , Ian En-Hsu Yen , Zhen Zhang , Kun Xu , Liang Zhao , Xi Peng , Yinglong Xia , Charu Aggarwal

Graphs have been extensively used to represent data from various domains. In the era of Big Data, information is being generated at a fast pace, and analyzing the same is a challenge. Various methods have been proposed to speed up the…

Information Theory · Computer Science 2018-06-26 Rushabh Jitendrakumar Shah

A current goal in the graph neural network literature is to enable transformers to operate on graph-structured data, given their success on language and vision tasks. Since the transformer's original sinusoidal positional encodings (PEs)…

Machine Learning · Computer Science 2023-04-11 Patrick Soga , David Chiang