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Embedding computation in biochemical environments incompatible with traditional electronics is expected to have wide-ranging impact in synthetic biology, medicine, nanofabrication and other fields. Natural biochemical systems are typically…

Machine Learning · Computer Science 2022-06-15 Marko Vasic , Cameron Chalk , Austin Luchsinger , Sarfraz Khurshid , David Soloveichik

This work proposes a novel neural network architecture, called the Dynamically Controlled Recurrent Neural Network (DCRNN), specifically designed to model dynamical systems that are governed by ordinary differential equations (ODEs). The…

Neural and Evolutionary Computing · Computer Science 2019-11-04 Yiwei Fu , Samer Saab , Asok Ray , Michael Hauser

Recurrent neural networks are powerful tools for understanding and modeling computation and representation by populations of neurons. Continuous-variable or "rate" model networks have been analyzed and applied extensively for these…

Neurons and Cognition · Quantitative Biology 2016-01-29 Brian DePasquale , Mark M. Churchland , L. F. Abbott

Recurrent neural networks (RNNs) such as long short-term memory and gated recurrent units are pivotal building blocks across a broad spectrum of sequence modeling problems. This paper proposes a recurrently controlled recurrent network…

Computation and Language · Computer Science 2018-11-27 Yi Tay , Luu Anh Tuan , Siu Cheung Hui

Recurrent neural networks (RNNs) for reinforcement learning (RL) have shown distinct advantages, e.g., solving memory-dependent tasks and meta-learning. However, little effort has been spent on improving RNN architectures and on…

Machine Learning · Computer Science 2019-11-27 Dongqi Han , Kenji Doya , Jun Tani

Recurrent neural networks are a powerful tool for modeling sequential data, but the dependence of each timestep's computation on the previous timestep's output limits parallelism and makes RNNs unwieldy for very long sequences. We introduce…

Neural and Evolutionary Computing · Computer Science 2016-11-22 James Bradbury , Stephen Merity , Caiming Xiong , Richard Socher

This paper proposes a method for lifelong learning of Recurrent Neural Networks, such as NNARX, ESN, LSTM, and GRU, to be used as plant models in control system synthesis. The problem is significant because in many practical applications it…

Systems and Control · Electrical Eng. & Systems 2022-08-09 Fabio Bonassi , Jing Xie , Marcello Farina , Riccardo Scattolini

Biochemical networks are used in computational biology, to model the static and dynamical details of systems involved in cell signaling, metabolism, and regulation of gene expression. Parametric and structural uncertainty, as well as…

Molecular Networks · Quantitative Biology 2014-10-15 Ovidiu Radulescu , Alexander N. Gorban , Andrei Zinovyev , Vincent Noel

In the field of image recognition, spiking neural networks (SNNs) have achieved performance comparable to conventional artificial neural networks (ANNs). In such applications, SNNs essentially function as traditional neural networks with…

Neural and Evolutionary Computing · Computer Science 2025-05-27 Enqi Zhang

Although Recurrent Neural Network (RNN) has been a powerful tool for modeling sequential data, its performance is inadequate when processing sequences with multiple patterns. In this paper, we address this challenge by introducing a novel…

Machine Learning · Computer Science 2019-02-28 Kui Zhao , Yuechuan Li , Chi Zhang , Cheng Yang , Huan Xu

Recurrent Neural Cascades (RNCs) are the recurrent neural networks with no cyclic dependencies among recurrent neurons. This class of recurrent networks has received a lot of attention in practice. Besides training methods for a fixed…

Machine Learning · Computer Science 2024-09-09 Nadezda Alexandrovna Knorozova , Alessandro Ronca

Chemical reaction networks are widely used to model stochastic dynamics in chemical kinetics, systems biology and epidemiology. Solving the chemical master equation that governs these systems poses a significant challenge due to the large…

Molecular Networks · Quantitative Biology 2025-12-16 Jiayu Weng , Xinyi Zhu , Jing Liu , Linyuan Lü , Pan Zhang , Ying Tang

Recurrent Neural Networks (RNN) have obtained excellent result in many natural language processing (NLP) tasks. However, understanding and interpreting the source of this success remains a challenge. In this paper, we propose Recurrent…

Computation and Language · Computer Science 2016-04-25 Ke Tran , Arianna Bisazza , Christof Monz

Modern artificial intelligence works typically train the parameters of fixed-sized deep neural networks using gradient-based optimization techniques. Simple evolutionary algorithms have recently been shown to also be capable of optimizing…

Neural and Evolutionary Computing · Computer Science 2023-04-26 Maximilien Le Clei , Pierre Bellec

The recurrent network architecture is a widely used model in sequence modeling, but its serial dependency hinders the computation parallelization, which makes the operation inefficient. The same problem was encountered in serial adder at…

Machine Learning · Computer Science 2021-08-25 Haowei Jiang , Feiwei Qin , Jin Cao , Yong Peng , Yanli Shao

We show that adding new chemical species into the reactions of a chemical reaction network (CRN) in such a way that the rank of the network remains unchanged preserves its capacity for multiple nondegenerate equilibria and/or periodic…

Dynamical Systems · Mathematics 2022-09-14 Murad Banaji , Balázs Boros , Josef Hofbauer

Change detection is one of the central problems in earth observation and was extensively investigated over recent decades. In this paper, we propose a novel recurrent convolutional neural network (ReCNN) architecture, which is trained to…

Computer Vision and Pattern Recognition · Computer Science 2019-03-27 Lichao Mou , Lorenzo Bruzzone , Xiao Xiang Zhu

We demonstrate a machine learning based approach which can learn the time-dependent electronic excitation dynamics of small molecules subjected to ion irradiation. Ensembles of recurrent neural networks are trained on data generated by…

Chemical Physics · Physics 2024-09-24 Ethan P. Shapera , Cheng-Wei Lee

We present recursive recurrent neural networks with attention modeling (R$^2$AM) for lexicon-free optical character recognition in natural scene images. The primary advantages of the proposed method are: (1) use of recursive convolutional…

Computer Vision and Pattern Recognition · Computer Science 2016-03-11 Chen-Yu Lee , Simon Osindero

An algorithm is given in this paper for the computation of dynamically equivalent weakly reversible realizations with the maximal number of reactions, for chemical reaction networks (CRNs) with mass action kinetics. The original problem…

Dynamical Systems · Mathematics 2011-07-05 Gabor Szederkenyi , Katalin M. Hangos , Zsolt Tuza
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