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While semantic segmentation has seen tremendous improvements in the past, there are still significant labeling efforts necessary and the problem of limited generalization to classes that have not been present during training. To address…

Computer Vision and Pattern Recognition · Computer Science 2023-12-19 Benedikt Blumenstiel , Johannes Jakubik , Hilde Kühne , Michael Vössing

The MeMC is an open-source software package for monte-carlo simulation of elastic shells. It is designed as a tool to interpret the force-distance data generated by indentation of biological nano-vesicles by atomic force microscopes. The…

Computational Physics · Physics 2022-06-28 Vipin Agrawal , Vikash Pandey , Hanna Kylhammar , Apurba Dev , Dhrubaditya Mitra

Large language models (LLMs) have recently advanced text-driven 3D generation, yet Text-to-CAD remains far from supporting industrial product design. Existing benchmarks focus primarily on generating single-part CAD models and evaluate them…

Artificial Intelligence · Computer Science 2026-05-28 Xiaoyu Dong , Zhi Li , Xiao-Ming Wu

Machine learning (ML) is increasingly becoming a common tool in computational chemistry. At the same time, the rapid development of ML methods requires a flexible software framework for designing custom workflows. MLatom 3 is a program…

Feature engineering is of critical importance in the field of Data Science. While any data scientist knows the importance of rigorously preparing data to obtain good performing models, only scarce literature formalizes its benefits. In this…

Methodology · Statistics 2023-06-30 Florian Felice , Christophe Ley , Andreas Groll , Stéphane Bordas

In recent years, machine learning (ML) has gained significant popularity in the field of chemical informatics and electronic structure theory. These techniques often require researchers to engineer abstract "features" that encode chemical…

Human-Computer Interaction · Computer Science 2022-07-11 Xiangyun Lei , Fred Hohman , Duen Horng Chau , Andrew J. Medford

Software engineering (SE) is a dynamic field that involves multiple phases all of which are necessary to develop sustainable software systems. Machine learning (ML), a branch of artificial intelligence (AI), has drawn a lot of attention in…

Software Engineering · Computer Science 2024-06-21 Nyaga Fred , I. O. Temkin

Incorporation of machine learning (ML) techniques into atomic-scale modeling has proven to be an extremely effective strategy to improve the accuracy and reduce the computational cost of simulations. It also entails conceptual and practical…

Artificial Intelligence (AI) or Machine Learning (ML) systems have been widely adopted as value propositions by companies in all industries in order to create or extend the services and products they offer. However, developing AI/ML systems…

Software Engineering · Computer Science 2020-11-10 Elizamary Nascimento , Anh Nguyen-Duc , Ingrid Sundbø , Tayana Conte

Energy functions for pure and heterogenous systems are one of the backbones for molecular simulation of condensed phase systems. With the advent of machine learned potential energy surfaces (ML-PESs) a new era has started. Statistical…

This paper presents a SysML-based approach to enhance functional and software development process within an industrial context. The recent changes in technology such as electromobility and increased automation in heavy construction…

Software Engineering · Computer Science 2019-06-21 Saurabh Tiwari , Emina Smajlovic , Amina Krekic , Jagadish Suryadevara

Structural modeling is a fundamental component of computational engineering science, in which even minor physical inconsistencies or specification violations may invalidate downstream simulations. The potential of large language models…

Software Engineering · Computer Science 2026-02-10 Yongqing Jiang , Jianze Wang , Zhiqi Shen , Zhenghong Lin , Jiayuan Wang , Yijian Yang , Kaoshan Dai , Haoran Luo

The present level of development of molecular force field methods is assessed from the point of view of simulation-based engineering, outlining the immediate perspective for further development and highlighting the newly emerging discipline…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-05-22 Martin Horsch , Christoph Niethammer , Jadran Vrabec , Hans Hasse

Machine learning (ML) components are being added to more and more critical and impactful software systems, but the software development process of real-world production systems from prototyped ML models remains challenging with additional…

Software Engineering · Computer Science 2024-05-07 Jie JW Wu

We present an efficient approach for generating highly accurate molecular potential energy surfaces (PESs) using self-correcting, kernel ridge regression (KRR) based machine learning (ML). We introduce structure-based sampling to…

Chemical Physics · Physics 2018-08-20 Pavlo O. Dral , Alec Owens , Sergei N. Yurchenko , Walter Thiel

CELES is a freely available MATLAB toolbox to simulate light scattering by many spherical particles. Aiming at high computational performance, CELES leverages block-diagonal preconditioning, a lookup-table approach to evaluate costly…

Computational Physics · Physics 2017-06-08 Amos Egel , Lorenzo Pattelli , Giacomo Mazzamuto , Diederik S. Wiersma , Uli Lemmer

Over the last two decades, Electron Energy Loss Spectroscopy (EELS) imaging with a scanning transmission electron microscope (STEM) has emerged as a technique of choice for visualizing complex chemical, electronic, plasmonic, and phononic…

From its early foundations in the 1970s, empirical software engineering (ESE) has evolved into a mature research discipline that embraces a plethora of different topics, methodologies, and industrial practices. Despite its remarkable…

Software Engineering · Computer Science 2025-12-09 Justus Bogner , Roberto Verdecchia

Full dimensional potential energy surfaces (PESs) based on machine learning (ML) techniques provide means for accurate and efficient molecular simulations in the gas- and condensed-phase for various experimental observables ranging from…

Chemical Physics · Physics 2023-07-26 Kaisheng Song , Silvan Käser , Kai Töpfer , Luis Itza Vazquez-Salazar , Markus Meuwly

This volume contains the proceedings of MARS 2022, the fifth workshop on Models for Formal Analysis of Real Systems, held as part of ETAPS 2022, the European Joint Conferences on Theory and Practice of Software. The MARS workshops bring…

Logic in Computer Science · Computer Science 2022-03-18 Clemens Dubslaff , Bas Luttik