Related papers: On Jacob Ziv's Individual-Sequence Approach to Inf…
Relative Lempel-Ziv (RLZ) is a popular algorithm for compressing databases of genomes from individuals of the same species when fast random access is desired. With Kuruppu et al.'s (SPIRE 2010) original implementation, a reference genome is…
Advances in DNA sequencing technology will soon result in databases of thousands of genomes. Within a species, individuals' genomes are almost exact copies of each other; e.g., any two human genomes are 99.9% the same. Relative Lempel-Ziv…
The pressing need for eficient compression schemes for XML documents has recently been focused on stack computation [6, 9], and in particular calls for a formulation of information-lossless stack or pushdown compressors that allows a formal…
We describe a universal information compression scheme that compresses any pure quantum i.i.d. source asymptotically to its von Neumann entropy, with no prior knowledge of the structure of the source. We introduce a diagonalisation…
Inferring causal relationships in the decision-making processes of machine learning algorithms is a crucial step toward achieving explainable Artificial Intelligence (AI). In this research, we introduce a novel causality measure and a…
Domains like bioinformatics, version control systems, collaborative editing systems (wiki), and others, are producing huge data collections that are very repetitive. That is, there are few differences between the elements of the collection.…
This article gives a self-contained analysis of the performance of the Lempel-Ziv compression algorithm on (hidden) Markovian sources. Specifically we include a full proof of the assertion that the compression rate approaches the entropy…
Lempel-Ziv (LZ77 or, briefly, LZ) is one of the most effective and widely-used compressors for repetitive texts. However, the existing efficient methods computing the exact LZ parsing have to use linear or close to linear space to index the…
We propose and study a family of universal sequential probability assignments on individual sequences, based on the incremental parsing procedure of the Lempel-Ziv (LZ78) compression algorithm. We show that the normalized log loss under any…
The compression-complexity trade-off of lossy compression algorithms that are based on a random codebook or a random database is examined. Motivated, in part, by recent results of Gupta-Verd\'{u}-Weissman (GVW) and their underlying…
Relative Lempel-Ziv (RLZ) parsing is a dictionary compression method in which a string $S$ is compressed relative to a second string $R$ (called the reference) by parsing $S$ into a sequence of substrings that occur in $R$. RLZ is…
We analyze emission trajectories from a driven-dissipative two-qubit system and a classical telegraph model with matched rates. Using Lempel-Ziv complexity, mutual information, and temporal correlations, we show that both models undergo a…
This paper presents conditional versions of Lempel-Ziv (LZ) algorithm for settings where compressor and decompressor have access to the same side information. We propose a fixed-length-parsing LZ algorithm with side information, motivated…
We introduce the first self-index based on the Lempel-Ziv 1977 compression format (LZ77). It is particularly competitive for highly repetitive text collections such as sequence databases of genomes of related species, software repositories,…
We present a framework facilitating the implementation and comparison of text compression algorithms. We evaluate its features by a case study on two novel compression algorithms based on the Lempel-Ziv compression schemes that perform well…
We propose a novel, lightweight supervised dictionary learning framework for text classification based on data compression and representation. This two-phase algorithm initially employs the Lempel-Ziv-Welch (LZW) algorithm to construct a…
Compression techniques that support fast random access are a core component of any information system. Current state-of-the-art methods group documents into fixed-sized blocks and compress each block with a general-purpose adaptive…
Indexing highly repetitive collections has become a relevant problem with the emergence of large repositories of versioned documents, among other applications. These collections may reach huge sizes, but are formed mostly of documents that…
Lempel-Ziv is an easy-to-compute member of a wide family of so-called macro schemes; it restricts pointers to go in one direction only. Optimal bidirectional macro schemes are NP-complete to find, but they may provide much better…
Lempel-Ziv-Double (LZD) is a variation of the LZ78 compression scheme that achieves better compression on repetitive datasets. Nevertheless, prior research has identified computational inefficiencies and a weakness in its compressibility…