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Tree representations of (sets of) symmetric binary relations, or equivalently edge-colored undirected graphs, are of central interest, e.g.\ in phylogenomics. In this context symbolic ultrametrics play a crucial role. Symbolic ultrametrics…
We consider the problem of embedding the nodes of a hypergraph into Euclidean space under the assumption that the interactions arose through closeness to unknown hyperedge centres. In this way, we tackle the inverse problem associated with…
We give deterministic distributed $(1+\epsilon)$-approximation algorithms for Minimum Vertex Coloring and Maximum Independent Set on chordal graphs in the LOCAL model. Our coloring algorithm runs in $O(\frac{1}{\epsilon} \log n)$ rounds,…
For a tree decomposition $\mathcal{T}$ of a graph $G$, by $\mu(\mathcal{T})$ we denote the size of a largest induced matching in $G$ all of whose edges intersect one bag of $\mathcal{T}$. Induced matching treewidth of a graph $G$ is the…
Full Bayesian computational inference for model determination in undirected graphical models is currently restricted to decomposable graphs, except for problems of very small scale. In this paper we develop new, more efficient methodology…
Learning low-dimensional numerical representations from symbolic data, e.g., embedding the nodes of a graph into a geometric space, is an important concept in machine learning. While embedding into Euclidean space is common, recent…
Given a weighted toroidal graph, each realization to a Euclidean torus is associated with the Dirichlet energy. By minimizing the energy over all possible Euclidean structures and over all realizations within a fixed homotopy class, one…
Given a set of points in the plane, we want to establish a connection network between these points that consists of several disjoint layers. Motivated by sensor networks, we want that each layer is spanning and plane, and that no edge is…
We present an algorithm for min-cost flow in graphs with $n$ vertices and $m$ edges, given a tree decomposition of width $\tau$ and size $S$, and polynomially bounded, integral edge capacities and costs, running in…
Knots are commonly represented and manipulated via diagrams, which are decorated planar graphs. When such a knot diagram has low treewidth, parameterized graph algorithms can be leveraged to ensure the fast computation of many invariants…
We describe an efficient and scalable spherical graph embedding method. The method uses a generalization of the Euclidean stress function for Multi-Dimensional Scaling adapted to spherical space, where geodesic pairwise distances are…
The problem considered is the following. Given a graph with edge weights satisfying the triangle inequality, and a degree bound for each vertex, compute a low-weight spanning tree such that the degree of each vertex is at most its specified…
We obtain a polynomial-time 17/12-approximation algorithm for the minimum-cost 2-vertex-connected spanning subgraph problem, restricted to graphs of minimum degree at least 3. Our algorithm uses the framework of ear-decompositions for…
A spanner graph on a set of points in $R^d$ contains a shortest path between any pair of points with length at most a constant factor of their Euclidean distance. In this paper we investigate new models and aim to interpret why good…
This paper studies Minimum Spanning Trees under incomplete information for its vertices. We assume that no information is available on the precise placement of vertices so that it is only known that vertices belong to some neighborhoods…
We provide algorithms for the minimum 2-edge-connected spanning subgraph problem and the minimum 2-vertex-connected spanning subgraph problem with approximation ratio both $\frac{4}{3}$. Using a common theme, the algorithms and their…
Given a set of points in the Euclidean plane, the Euclidean \textit{$\delta$-minimum spanning tree} ($\delta$-MST) problem is the problem of finding a spanning tree with maximum degree no more than $\delta$ for the set of points such the…
Contour trees describe the topology of level sets in scalar fields and are widely used in topological data analysis and visualization. A main challenge of utilizing contour trees for large-scale scientific data is their computation at scale…
We study the NP-hard problem of approximating a Minimum Routing Cost Spanning Tree in the message passing model with limited bandwidth (CONGEST model). In this problem one tries to find a spanning tree of a graph $G$ over $n$ nodes that…
A tree decomposition of the coordinates of a code is a mapping from the coordinate set to the set of vertices of a tree. A tree decomposition can be extended to a tree realization, i.e., a cycle-free realization of the code on the…