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Artificial Intelligence Virtual Cells (AIVCs) aim to learn executable, decision-relevant models of cell state from multimodal, multiscale measurements. Recent studies have introduced single-cell and spatial foundation models, improved…

Artificial Intelligence · Computer Science 2025-12-03 Chengpeng Hu , Calvin Yu-Chian Chen

Neurodiverse learners often require reading supports, yet increasing scaffold richness can sometimes overload attention and working memory rather than improve comprehension. Grounded in the Construction-Integration model and a contingent…

Computation and Language · Computer Science 2026-04-03 Soufiane Jhilal , Eleonora Pasqua , Caterina Marchesi , Riccardo Corradi , Martina Galletti

Artificial Intelligence (AI) has the potential to revolutionize diagnosis and segmentation in medical imaging. However, development and clinical implementation face multiple challenges including limited data availability, lack of…

Image and Video Processing · Electrical Eng. & Systems 2025-01-22 Zelong Liu , Andrew Tieu , Nikhil Patel , Georgios Soultanidis , Louisa Deyer , Ying Wang , Sean Huver , Alexander Zhou , Yunhao Mei , Zahi A. Fayad , Timothy Deyer , Xueyan Mei

Early tumor detection save lives. Each year, more than 300 million computed tomography (CT) scans are performed worldwide, offering a vast opportunity for effective cancer screening. However, detecting small or early-stage tumors on these…

Data scarcity is a significant obstacle hindering the learning of powerful machine learning models in critical healthcare applications. Data-sharing mechanisms among multiple entities (e.g., hospitals) can accelerate model training and…

Computer Vision and Pattern Recognition · Computer Science 2023-06-27 Faris Almalik , Naif Alkhunaizi , Ibrahim Almakky , Karthik Nandakumar

Virtual screening, which identifies potential drugs from vast compound databases to bind with a particular protein pocket, is a critical step in AI-assisted drug discovery. Traditional docking methods are highly time-consuming, and can only…

Machine Learning · Computer Science 2023-10-11 Bowen Gao , Bo Qiang , Haichuan Tan , Minsi Ren , Yinjun Jia , Minsi Lu , Jingjing Liu , Weiying Ma , Yanyan Lan

Visible and Infrared Image Fusion (VIF) has garnered significant interest across a wide range of high-level vision tasks, such as object detection and semantic segmentation. However, the evaluation of VIF methods remains challenging due to…

Computer Vision and Pattern Recognition · Computer Science 2024-10-10 Dayan Guan , Yixuan Wu , Tianzhu Liu , Alex C. Kot , Yanfeng Gu

Deep learning methods are useful for high-dimensional data and are becoming widely used in many areas of software engineering. Deep learners utilizes extensive computational power and can take a long time to train-- making it difficult to…

Software Engineering · Computer Science 2024-02-19 Suvodeep Majumder , Nikhila Balaji , Katie Brey , Wei Fu , Tim Menzies

Accurate histopathological diagnosis often requires multiple differently stained tissue sections, a process that is time-consuming, labor-intensive, and environmentally taxing due to the use of multiple chemical stains. Recently, virtual…

Computer Vision and Pattern Recognition · Computer Science 2025-09-18 Jiabo MA , Wenqiang Li , Jinbang Li , Ziyi Liu , Linshan Wu , Fengtao Zhou , Li Liang , Ronald Cheong Kin Chan , Terence T. W. Wong , Hao Chen

Drug optimization has become increasingly crucial in light of fast-mutating virus strains and drug-resistant cancer cells. Nevertheless, it remains challenging as it necessitates retaining the beneficial properties of the original drug…

Biomolecules · Quantitative Biology 2025-08-12 Xuefeng Liu , Songhao Jiang , Ian Foster , Jinbo Xu , Rick Stevens

Machine learning methods may have the potential to significantly accelerate drug discovery. However, the increasing rate of new methodological approaches being published in the literature raises the fundamental question of how models should…

Machine Learning · Computer Science 2020-02-19 Matthew C. Robinson , Robert C. Glen , Alpha A. Lee

The rapid growth of molecular foundation models and large language models has encouraged a scale centred view of AI in drug discovery, in which larger pretrained models are expected to supersede compact cheminformatics models and graph…

Machine Learning · Computer Science 2026-05-18 Jinjiang Guo

Sub-visible particle analysis using flow imaging microscopy combined with deep learning has proven effective in identifying particle types, enabling the distinction of harmless components such as silicone oil from protein particles.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-11 Utku Ozbulak , Michaela Cohrs , Hristo L. Svilenov , Joris Vankerschaver , Wesley De Neve

Vision foundation models (VFMs) have demonstrated remarkable performance across a wide range of downstream tasks. While several VFM adapters have shown promising results by leveraging the prior knowledge of VFMs, we identify two…

Computer Vision and Pattern Recognition · Computer Science 2025-07-22 Yifan Li , Xin Li , Tianqin Li , Wenbin He , Yu Kong , Liu Ren

Despite there now being more than 1,000 FDA-authorised AI medical devices, formal equity assessments -- whether model performance is uniform across patient subgroups -- are rare. Here, we evaluate the equity of 18 open-source brain tumour…

Molecular docking is critical to structure-based virtual screening, yet the throughput of such workflows is limited by the expensive optimization of scoring functions involved in most docking algorithms. We explore how machine learning can…

Biomolecules · Quantitative Biology 2024-09-04 Bowen Jing , Tommi Jaakkola , Bonnie Berger

Automatic detection of brain neoplasm in Magnetic Resonance Imaging (MRI) is gaining importance in many medical diagnostic applications. This report presents two improvements for brain neoplasm detection in MRI data: an advanced…

Computer Vision and Pattern Recognition · Computer Science 2021-01-26 Nilanjan Sinhababu , Monalisa Sarma , Debasis Samanta

Molecular representation learning aims to learn vector embeddings that capture molecular structure and geometry, thereby enabling property prediction and downstream scientific applications. In many AI for science tasks, labeled data are…

Biomolecules · Quantitative Biology 2026-01-28 Kun Li , Longtao Hu , Yida Xiong , Jiajun Yu , Hongzhi Zhang , Jiameng Chen , Xiantao Cai , Jia Wu , Wenbin Hu

Artificial intelligence (AI) has been widely applied in drug discovery with a major task as molecular property prediction. Despite booming techniques in molecular representation learning, key elements underlying molecular property…

Quantitative Methods · Quantitative Biology 2023-09-06 Jianyuan Deng , Zhibo Yang , Hehe Wang , Iwao Ojima , Dimitris Samaras , Fusheng Wang

Anomalies are by definition rare, thus labeled examples are very limited or nonexistent, and likely do not cover unforeseen scenarios. Unsupervised learning methods that don't necessarily encounter anomalies in training would be immensely…

Computer Vision and Pattern Recognition · Computer Science 2020-06-23 Louise Naud , Alexander Lavin