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The inference and training stages of Graph Neural Networks (GNNs) are often dominated by the time required to compute a long sequence of matrix multiplications between the sparse graph adjacency matrix and its embedding. To accelerate these…

Data Structures and Algorithms · Computer Science 2024-09-05 João N. F. Alves , Samir Moustafa , Siegfried Benkner , Alexandre P. Francisco , Wilfried N. Gansterer , Luís M. S. Russo

We propose a two-level nested preconditioned iterative scheme for solving sparse linear systems of equations in which the coefficient matrix is symmetric and indefinite with relatively small number of negative eigenvalues. The proposed…

Numerical Analysis · Computer Science 2019-01-29 Murat Manguoglu , Volker Mehrmann

Graph neural network (GNN) is a promising approach to learning and predicting physical phenomena described in boundary value problems, such as partial differential equations (PDEs) with boundary conditions. However, existing models…

Machine Learning · Computer Science 2023-03-24 Masanobu Horie , Naoto Mitsume

Here we present a machine learning framework and model implementation that can learn to simulate a wide variety of challenging physical domains, involving fluids, rigid solids, and deformable materials interacting with one another. Our…

Machine Learning · Computer Science 2020-09-15 Alvaro Sanchez-Gonzalez , Jonathan Godwin , Tobias Pfaff , Rex Ying , Jure Leskovec , Peter W. Battaglia

Graph Neural Networks (GNNs) have achieved state-of-the-art performance in solving graph classification tasks. However, most GNN architectures aggregate information from all nodes and edges in a graph, regardless of their relevance to the…

Machine Learning · Statistics 2024-04-19 Pablo Sanchez-Martin , Kinaan Aamir Khan , Isabel Valera

We study first-order methods with preconditioning for solving structured nonlinear convex optimization problems. We propose a new family of preconditioners generated by symmetric polynomials. They provide first-order optimization methods…

Optimization and Control · Mathematics 2023-01-31 Nikita Doikov , Anton Rodomanov

Graph prediction problems prevail in data analysis and machine learning. The inverse prediction problem, namely to infer input data from given output labels, is of emerging interest in various applications. In this work, we develop…

Machine Learning · Statistics 2022-11-22 Chen Xu , Xiuyuan Cheng , Yao Xie

Graph Neural Networks (GNNs) have shown success in learning from graph-structured data, with applications to fraud detection, recommendation, and knowledge graph reasoning. However, training GNN efficiently is challenging because: 1) GPU…

Machine Learning · Computer Science 2021-11-12 Seung Won Min , Kun Wu , Mert Hidayetoğlu , Jinjun Xiong , Xiang Song , Wen-mei Hwu

Inexpensive machine learning potentials are increasingly being used to speed up structural optimization and molecular dynamics simulations of materials by iteratively predicting and applying interatomic forces. In these settings, it is…

Chemical Physics · Physics 2023-09-12 Jonas Busk , Mikkel N. Schmidt , Ole Winther , Tejs Vegge , Peter Bjørn Jørgensen

Matrix completion models are among the most common formulations of recommender systems. Recent works have showed a boost of performance of these techniques when introducing the pairwise relationships between users/items in the form of…

Machine Learning · Computer Science 2017-04-25 Federico Monti , Michael M. Bronstein , Xavier Bresson

The main computational cost of algorithms for computing reduced-order models of parametric dynamical systems is in solving sequences of very large and sparse linear systems. We focus on efficiently solving these linear systems, arising…

Numerical Analysis · Mathematics 2018-09-19 Navneet Pratap Singh , Kapil Ahuja

GMRES is one of the most popular iterative methods for the solution of large linear systems of equations that arise from the discretization of linear well-posed problems, such as Dirichlet boundary value problems for elliptic partial…

Numerical Analysis · Mathematics 2018-06-19 Silvia Gazzola , Silvia Noschese , Paolo Novati , Lothar Reichel

Graph Neural Networks (GNNs) are widely adopted for fault diagnosis in microservice systems, premised on their ability to model service dependencies. However, the necessity of explicit graph structures remains underexamined, as existing…

Software Engineering · Computer Science 2025-03-11 Fei Gao , Ruyue Xin , Xiaocui Li , Yaqiang Zhang

Machine learning methods on graphs have proven useful in many applications due to their ability to handle generally structured data. The framework of Gaussian Markov Random Fields (GMRFs) provides a principled way to define Gaussian models…

Machine Learning · Statistics 2022-06-13 Joel Oskarsson , Per Sidén , Fredrik Lindsten

Graph Neural Networks (GNNs), a generalization of deep neural networks on graph data have been widely used in various domains, ranging from drug discovery to recommender systems. However, GNNs on such applications are limited when there are…

Machine Learning · Computer Science 2021-11-09 Debmalya Mandal , Sourav Medya , Brian Uzzi , Charu Aggarwal

Link prediction in structured-data is an important problem for many applications, especially for recommendation systems. Existing methods focus on how to learn the node representation based on graph-based structure. High-dimensional sparse…

Social and Information Networks · Computer Science 2021-12-28 Yifei Zhao , Mingdong Ou , Rongzhi Zhang , Meng Li

Pre-conditioning is a well-known concept that can significantly improve the convergence of optimization algorithms. For noise-free problems, where good pre-conditioners are not known a priori, iterative linear algebra methods offer one way…

Machine Learning · Computer Science 2019-02-21 Filip de Roos , Philipp Hennig

We consider effective preconditioners for solving Laplacians of general weighted graphs. Theoretically, spectral sparsifiers (SSs) provide preconditioners of optimal computational complexity. However, they are not easy to use for real-world…

Numerical Analysis · Mathematics 2022-08-31 Xiaozhe Hu , Junyuan Lin

Graph Neural Networks (GNNs) have been recently leveraged to solve several logical reasoning tasks. Nevertheless, counting problems such as propositional model counting (#SAT) are still mostly approached with traditional solvers. Here we…

Artificial Intelligence · Computer Science 2022-05-10 Gaia Saveri , Luca Bortolussi

With the hardware support for half-precision arithmetic on NVIDIA V100 GPUs, high-performance computing applications can benefit from lower precision at appropriate spots to speed up the overall execution time. In this paper, we investigate…

Mathematical Software · Computer Science 2020-07-16 Kyaw L. Oo , Andreas Vogel