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This paper introduces a new open-source software program called VoroTop, which uses Voronoi topology to analyze local structure in atomic systems. Strengths of this approach include its abilities to analyze high-temperature systems and to…

Materials Science · Physics 2018-04-13 Emanuel A. Lazar

Physical systems are frequently modeled as sets of points in space, each representing the position of an atom, molecule, or mesoscale particle. As many properties of such systems depend on the underlying ordering of their constituent…

Other Condensed Matter · Physics 2015-11-18 Emanuel A. Lazar , Jian Han , David J. Srolovitz

VORO++ is a software library written in C++ for computing the Voronoi tessellation, a technique in computational geometry that is widely used for analyzing systems of particles. VORO++ was released in 2009 and is based on computing the…

Computational Physics · Physics 2023-08-09 Jiayin Lu , Emanuel A. Lazar , Chris H. Rycroft

Given a countable set of points in a continuous space, Voronoi tessellation is an intuitive way of partitioning the space according to the distance to the individual points. As a powerful approach to obtain structural information, it has a…

Soft Condensed Matter · Physics 2020-02-17 Simeon Völkel , Kai Huang

Cellular structures found in nature exhibit remarkable properties such as high strength, high energy absorption, excellent thermal/acoustic insulation, and fluid transfusion. Many of these structures are Voronoi-like; therefore researchers…

Computational Engineering, Finance, and Science · Computer Science 2024-04-30 Rahul Kumar Padhy , Krishnan Suresh , Aaditya Chandrasekhar

The pair correlation function (PCF) has proven an effective tool for analyzing many physical systems due to its simplicity and its applicability to simulated and experimental data. However, as an averaged quantity, the PCF can fail to…

Disordered Systems and Neural Networks · Physics 2023-12-14 Vasco M. Worlitzer , Gil Ariel , Emanuel A. Lazar

We discuss existing and new computational analysis techniques to classify local atomic arrangements in large-scale atomistic computer simulations of crystalline solids. This article includes a performance comparison of typical analysis…

Materials Science · Physics 2012-06-13 Alexander Stukowski

Many physical systems can be studied as collections of particles embedded in space, evolving through deterministic evolution equations. Natural questions arise concerning how to characterize these arrangements - are they ordered or…

Computational Physics · Physics 2022-06-03 Emanuel A. Lazar , Jiayin Lu , Chris H. Rycroft

Cellular structures manifest their outstanding mechanical properties in many biological systems. One key challenge for designing and optimizing these geometrically complicated structures lies in devising an effective geometric…

Many standard structural quantities, such as order parameters and correlation functions, exist for common condensed matter systems, such as spherical and rod-like particles. However, these structural quantities are often insufficient for…

Soft Condensed Matter · Physics 2012-01-18 Aaron S. Keys , Christopher R. Iacovella , Sharon C. Glotzer

We have developed a novel method of determining 2D radial density profiles for astronomical systems of discrete objects using Voronoi tessellations. This Voronoi-based method was tested against the standard annulus-based method on 5…

Instrumentation and Methods for Astrophysics · Physics 2024-07-04 Veronika Dornan , William E. Harris

In nonequilibrium statistical physics, quantifying the nearest (and higher-order) neighbors and free volumes of particles in many-body systems is crucial to elucidating the origin of macroscopic collective phenomena, such as glass/granular…

Statistical Mechanics · Physics 2024-05-07 Daigo Mugita , Kazuyoshi Souno , Hiroaki Koyama , Taisei Nakamura , Masaharu Isobe

Voronoi tessellation, also known as Voronoi diagram, is an important computational geometry technique that has applications in various scientific disciplines. It involves dividing a given space into regions based on the proximity to a set…

Computational Geometry · Computer Science 2024-12-17 Sergei Shumilin , Alexander Ryabov , Serguei Barannikov , Evgeny Burnaev , Vladimir Vanovskii

We investigate the statistical properties of two dimensional random cellular systems (froths) in term of their shell structure. The froth is analyzed as a system of concentric layers of cells around a given central cell. We derive exact…

Disordered Systems and Neural Networks · Physics 2009-10-28 T. Aste , K. Y. Szeto , W. Y. Tam

Calculations on atomistic scale are necessary for understanding of physical phenomena occurring during advanced processing of liquids, slurries, and nano-ceramics composite materials. This paper describes some new ideas for using the…

Soft Condensed Matter · Physics 2007-05-23 Wilfried Wunderlich

Accurate structural analysis is essential to gain physical knowledge and understanding of atomic-scale processes in materials from atomistic simulations. However, traditional analysis methods often reach their limits when applied to…

For the analysis of systems consisting of small, regular objects, the methods of mathematical morphology applied to images of these systems are well-suited. One of these methods is the use of Voronoi polygons. It was found that the Voronoi…

Computational Geometry · Computer Science 2011-05-24 M. Montserrat Alonso Ferrero

We introduce a general, efficient method to completely describe the topology of individual grains, bubbles, and cells in three-dimensional polycrystals, foams, and other multicellular microstructures. This approach is applied to a pair of…

Materials Science · Physics 2017-11-10 Emanuel A. Lazar , Jeremy K. Mason , Robert D. MacPherson , David J. Srolovitz

Starting from three-dimensional volume data of a granular packing, as e.g. obtained by X-ray Computed Tomography, we discuss methods to first detect the individual particles in the sample and then analyze their properties. This analysis…

Data Analysis, Statistics and Probability · Physics 2018-02-16 Simon Weis , Matthias Schröter

Machine learning techniques have been used to quantify the relationship between local structural features and variations in local dynamical activity in disordered glass-forming materials. To date these methods have been applied to an array…

Soft Condensed Matter · Physics 2021-01-07 Indrajit Tah , Tristan A. Sharp , Andrea J. Liu , Daniel M. Sussman
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