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Text-to-SQL translates natural language questions into SQL statements grounded in a target database schema. Ensuring the reliability and executability of such systems requires validating generated SQL, but most existing approaches focus…

Machine Learning · Computer Science 2025-12-30 Rihong Qiu , Zhibang Yang , Xinke Jiang , Weibin Liao , Xin Gao , Xu Chu , Junfeng Zhao , Yasha Wang

Objectives: Electronic health records (EHRs) are only a first step in capturing and utilizing health-related data - the challenge is turning that data into useful information. Furthermore, EHRs are increasingly likely to include data…

Artificial Intelligence · Computer Science 2012-08-20 Casey Bennett , Tom Doub , Rebecca Selove

The cross-domain text-to-SQL task aims to build a system that can parse user questions into SQL on complete unseen databases, and the single-domain text-to-SQL task evaluates the performance on identical databases. Both of these setups…

Computation and Language · Computer Science 2023-05-26 Hanchong Zhang , Jieyu Li , Lu Chen , Ruisheng Cao , Yunyan Zhang , Yu Huang , Yefeng Zheng , Kai Yu

Electronic Health Records (EHRs) contain a large volume of heterogeneous patient data, which are useful at the point of care and for retrospective research. These data are typically stored in relational databases. Gaining an integrated view…

Computers and Society · Computer Science 2018-06-04 Dina Levy-Lambert , Jen J. Gong , Tristan Naumann , Tom J. Pollard , John V. Guttag

In this paper we study the problem of predicting clinical diagnoses from textual Electronic Health Records (EHR) data. We show the importance of this problem in medical community and present comprehensive historical review of the problem…

Computation and Language · Computer Science 2020-09-29 Pavel Blinov , Manvel Avetisian , Vladimir Kokh , Dmitry Umerenkov , Alexander Tuzhilin

Several large-scale datasets (e.g., WikiSQL, Spider) for developing natural language interfaces to databases have recently been proposed. These datasets cover a wide breadth of domains but fall short on some essential domains, such as…

Computation and Language · Computer Science 2024-06-13 Rahul Kumar , Amar Raja Dibbu , Shrutendra Harsola , Vignesh Subrahmaniam , Ashutosh Modi

Background: Widespread adoption of electronic health records (EHRs) has enabled secondary use of EHR data for clinical research and healthcare delivery. Natural language processing (NLP) techniques have shown promise in their capability to…

Information Retrieval · Computer Science 2021-06-15 Sijia Liu , Yanshan Wang , Andrew Wen , Liwei Wang , Na Hong , Feichen Shen , Steven Bedrick , William Hersh , Hongfang Liu

Despite the growing availability of Electronic Health Record (EHR) data, researchers often face substantial barriers in effectively using these data for translational research due to their complexity, heterogeneity, and lack of standardized…

Conventional machine learning models, particularly tree-based approaches, have demonstrated promising performance across various clinical prediction tasks using electronic health record (EHR) data. Despite their strengths, these models…

Computation and Language · Computer Science 2025-05-26 Sara Ketabi , Dhanesh Ramachandram

The growing demand for machine learning in healthcare requires processing increasingly large electronic health record (EHR) datasets, but existing pipelines are not computationally efficient or scalable. In this paper, we introduce…

Machine Learning · Computer Science 2024-11-18 Ethan Steinberg , Michael Wornow , Suhana Bedi , Jason Alan Fries , Matthew B. A. McDermott , Nigam H. Shah

Text-to-SQL, the process of translating natural language into Structured Query Language (SQL), represents a transformative application of large language models (LLMs), potentially revolutionizing how humans interact with data. This paper…

In the dynamic hospital setting, decision support can be a valuable tool for improving patient outcomes. Data-driven inference of future outcomes is challenging in this dynamic setting, where long sequences such as laboratory tests and…

Quantitative Methods · Quantitative Biology 2024-04-25 Alan D. Kaplan , Priyadip Ray , John D. Greene , Vincent X. Liu

Text-to-SQL is a technology that converts natural language queries into the structured query language SQL. A novel research approach that has recently gained attention focuses on methods based on the complexity of SQL queries, achieving…

Computation and Language · Computer Science 2024-06-14 Jiawen Yi , Guo Chen , Zixiang Shen

The data available in Electronic Health Records (EHRs) provides the opportunity to transform care, and the best way to provide better care for one patient is through learning from the data available on all other patients. Temporal modelling…

Computation and Language · Computer Science 2021-07-08 Zeljko Kraljevic , Anthony Shek , Daniel Bean , Rebecca Bendayan , James Teo , Richard Dobson

Recent advances in Large Language Models (LLMs) have enabled the development of text-to-SQL models that allow clinicians to query structured data stored in Electronic Health Records (EHRs) using natural language. However, deploying these…

Computation and Language · Computer Science 2025-12-23 Gyubok Lee , Woosog Chay , Edward Choi

Deep learning models exhibit state-of-the-art performance for many predictive healthcare tasks using electronic health records (EHR) data, but these models typically require training data volume that exceeds the capacity of most healthcare…

Machine Learning · Computer Science 2018-10-24 Edward Choi , Cao Xiao , Walter F. Stewart , Jimeng Sun

Electronic Health Records (EHRs) play an important role in the healthcare system. However, their complexity and vast volume pose significant challenges to data interpretation and analysis. Recent advancements in Artificial Intelligence…

Medical texts, particularly electronic medical records (EMRs), are a cornerstone of modern healthcare, capturing critical information about patient care, diagnoses, and treatments. These texts hold immense potential for advancing clinical…

Computation and Language · Computer Science 2025-11-12 Mucheng Ren , Yucheng Yan , He Chen , Danqing Hu , Jun Xu , Xian Zeng

Electronic health record (EHR) systems contain a wealth of multimodal clinical data including structured data like clinical codes and unstructured data such as clinical notes. However, many existing EHR-focused studies has traditionally…

Machine Learning · Statistics 2025-08-20 Tianxi Cai , Feiqing Huang , Ryumei Nakada , Linjun Zhang , Doudou Zhou

Translating users' natural language queries (NL) into SQL queries (i.e., Text-to-SQL, a.k.a. NL2SQL) can significantly reduce barriers to accessing relational databases and support various commercial applications. The performance of…

Databases · Computer Science 2025-12-08 Xinyu Liu , Shuyu Shen , Boyan Li , Peixian Ma , Runzhi Jiang , Yuxin Zhang , Ju Fan , Guoliang Li , Nan Tang , Yuyu Luo