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Clustering categorical distributions in the finite-dimensional probability simplex is a fundamental task met in many applications dealing with normalized histograms. Traditionally, the differential-geometric structures of the probability…

Machine Learning · Computer Science 2021-11-22 Frank Nielsen , Ke Sun

In this paper we propose a new approach to detect clusters in undirected graphs with attributed vertices. We incorporate structural and attribute similarities between the vertices in an augmented graph by creating additional vertices and…

Machine Learning · Computer Science 2023-02-07 Pasqua D'Ambra , Panayot S. Vassilevski , Luisa Cutillo

Geometric constraints impact the formation of a broad range of spatial networks, from amino acid chains folding to proteins structures to rearranging particle aggregates. How the network of interactions dynamically self-organizes in such…

Molecular Networks · Quantitative Biology 2016-10-19 Nora Molkenthin , Marc Timme

In this paper we study weighted distances in scale-free spatial network models: hyperbolic random graphs (HRG), geometric inhomogeneous random graphs (GIRG) and scale-free percolation (SFP). In HRGs, $n=\Theta(\mathrm{e}^{R/2})$ vertices…

Probability · Mathematics 2019-11-21 Júlia Komjáthy , Bas Lodewijks

Euclidean distance geometry is the study of Euclidean geometry based on the concept of distance. This is useful in several applications where the input data consists of an incomplete set of distances, and the output is a set of points in…

Quantitative Methods · Quantitative Biology 2012-05-03 Leo Liberti , Carlile Lavor , Nelson Maculan , Antonio Mucherino

Euclidean geometry is among the earliest forms of mathematical thinking. While the geometric primitives underlying its constructions, such as perfect lines and circles, do not often occur in the natural world, humans rarely struggle to…

Computer Vision and Pattern Recognition · Computer Science 2022-12-01 Joy Hsu , Jiajun Wu , Noah D. Goodman

Over the last decade, random hyperbolic graphs have proved successful in providing geometric explanations for many key properties of real-world networks, including strong clustering, high navigability, and heterogeneous degree…

Physics and Society · Physics 2023-03-01 Béatrice Désy , Patrick Desrosiers , Antoine Allard

A generalization of the random geometric graph (RGG) model is proposed by considering a set of points uniformly and independently distributed on a rectangle of unit area instead of on a unit square [0,1]^2. The topological properties of the…

Physics and Society · Physics 2015-05-20 Ernesto Estrada , Matthew Sheerin

We study the problem of recovering a globally consistent Euclidean embedding of data, given only a local distance graph and propose a method that optimally represents these distances. The method operates solely on a neighborhood graph…

Machine Learning · Computer Science 2026-05-20 Dimitris Arabadjis

We develop a geometric framework to study the structure and function of complex networks. We assume that hyperbolic geometry underlies these networks, and we show that with this assumption, heterogeneous degree distributions and strong…

Statistical Mechanics · Physics 2010-09-14 Dmitri Krioukov , Fragkiskos Papadopoulos , Maksim Kitsak , Amin Vahdat , Marian Boguna

This paper investigates a model reduction problem for linear directed network systems, in which the interconnections among the vertices are described by general weakly connected digraphs. First, the definitions of pseudo controllability and…

Optimization and Control · Mathematics 2019-11-12 Xiaodong Cheng , Jacquelien M. A. Scherpen

We study the effects of spatial constraints on the structural properties of networks embedded in one or two dimensional space. When nodes are embedded in space, they have a well defined Euclidean distance $r$ between any pair. We assume…

Physics and Society · Physics 2009-11-13 Kosmas Kosmidis , Shlomo Havlin , Armin Bunde

Deep generative models are tremendously successful in learning low-dimensional latent representations that well-describe the data. These representations, however, tend to much distort relationships between points, i.e. pairwise distances…

Machine Learning · Computer Science 2018-09-14 Tao Yang , Georgios Arvanitidis , Dongmei Fu , Xiaogang Li , Søren Hauberg

Geometric Deep Learning (GDL) unifies a broad class of machine learning techniques from the perspectives of symmetries, offering a framework for introducing problem-specific inductive biases like Graph Neural Networks (GNNs). However, the…

Machine Learning · Computer Science 2024-08-29 Osvaldo Velarde , Lucas Parra , Paolo Boldi , Hernan Makse

Separable Bregman divergences induce Riemannian metric spaces that are isometric to the Euclidean space after monotone embeddings. We investigate fixed rate quantization and its codebook Voronoi diagrams, and report on experimental…

Machine Learning · Computer Science 2018-10-26 Erika Gomes-Gonçalves , Henryk Gzyl , Frank Nielsen

Networks are mathematical structures that are universally used to describe a large variety of complex systems such as the brain or the Internet. Characterizing the geometrical properties of these networks has become increasingly relevant…

Physics and Society · Physics 2015-05-26 Zhihao Wu , Giulia Menichetti , Christoph Rahmede , Ginestra Bianconi

Pairwise comparison of graphs is key to many applications in Machine learning ranging from clustering, kernel-based classification/regression and more recently supervised graph prediction. Distances between graphs usually rely on…

Machine Learning · Statistics 2023-09-29 Junjie Yang , Matthieu Labeau , Florence d'Alché-Buc

We present a framework for embedding graph structured data into a vector space, taking into account node features and topology of a graph into the optimal transport (OT) problem. Then we propose a novel distance between two graphs, named…

Machine Learning · Computer Science 2023-07-04 Dai Hai Nguyen , Koji Tsuda

Mining dense subgraphs is an important primitive across a spectrum of graph-mining tasks. In this work, we formally establish that two recurring characteristics of real-world graphs, namely heavy-tailed degree distributions and large…

Social and Information Networks · Computer Science 2020-08-19 Aritra Konar , Nicholas D. Sidiropoulos

Let B be a finite collection of geometric (not necessarily convex) bodies in the plane. Clearly, this class of geometric objects naturally generalizes the class of disks, lines, ellipsoids, and even convex polygons. We consider geometric…

Discrete Mathematics · Computer Science 2013-08-29 Alexander Grigoriev , Athanassios Koutsonas , Dimitrios M. Thilikos