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Single-cell datasets often lack individual cell labels, making it challenging to identify cells associated with disease. To address this, we introduce Mixture Modeling for Multiple Instance Learning (MMIL), an expectation maximization…

Quantitative Methods · Quantitative Biology 2024-06-13 Erin Craig , Timothy Keyes , Jolanda Sarno , Maxim Zaslavsky , Garry Nolan , Kara Davis , Trevor Hastie , Robert Tibshirani

We introduce and define the novel problem of multi-distribution information retrieval (IR) where given a query, systems need to retrieve passages from within multiple collections, each drawn from a different distribution. Some of these…

Information Retrieval · Computer Science 2023-06-23 Soumya Chatterjee , Omar Khattab , Simran Arora

Listwise reranking is a key yet computationally expensive component in vision-centric retrieval and multimodal retrieval-augmented generation (M-RAG) over long documents. While recent VLM-based rerankers achieve strong accuracy, their…

Information Retrieval · Computer Science 2026-05-13 Yiqun Sun , Pengfei Wei , Lawrence B. Hsieh

Scientific retrieval is essential for advancing scientific knowledge discovery. Within this process, document reranking plays a critical role in refining first-stage retrieval results. However, standard LLM listwise reranking faces…

Information Retrieval · Computer Science 2025-08-19 Runchu Tian , Xueqiang Xu , Bowen Jin , SeongKu Kang , Jiawei Han

With increasing and extensive use of electronic health records, clinicians are often under time pressure when they need to retrieve important information efficiently among large amounts of patients' health records in clinics. While a search…

Information Retrieval · Computer Science 2020-08-05 Zhiyun Ren , Bo Peng , Titus K. Schleyer , Xia Ning

Multi-Label Image Classification (MLIC) approaches usually exploit label correlations to achieve good performance. However, emphasizing correlation like co-occurrence may overlook discriminative features of the target itself and lead to…

Computer Vision and Pattern Recognition · Computer Science 2022-05-24 Jiazhi Xu , Sheng Huang , Fengtao Zhou , Luwen Huangfu , Daniel Zeng , Bo Liu

The challenge of unsupervised person re-identification (ReID) lies in learning discriminative features without true labels. This paper formulates unsupervised person ReID as a multi-label classification task to progressively seek true…

Computer Vision and Pattern Recognition · Computer Science 2020-04-21 Dongkai Wang , Shiliang Zhang

Large-scale text retrieval technology has been widely used in various practical business scenarios. This paper presents our systems for the TREC 2022 Deep Learning Track. We explain the hybrid text retrieval and multi-stage text ranking…

Information Retrieval · Computer Science 2023-08-24 Guangwei Xu , Yangzhao Zhang , Longhui Zhang , Dingkun Long , Pengjun Xie , Ruijie Guo

Medical coding is the task of assigning medical codes to clinical free-text documentation. Healthcare professionals manually assign such codes to track patient diagnoses and treatments. Automated medical coding can considerably alleviate…

Machine Learning · Computer Science 2023-04-24 Joakim Edin , Alexander Junge , Jakob D. Havtorn , Lasse Borgholt , Maria Maistro , Tuukka Ruotsalo , Lars Maaløe

Accurate International Classification of Diseases (ICD) coding is critical for clinical documentation, billing, and healthcare analytics, yet it remains a labour-intensive and error-prone task. Although large language models (LLMs) show…

Artificial Intelligence · Computer Science 2025-09-24 Hong-Jie Dai , Zheng-Hao Li , An-Tai Lu , Bo-Tsz Shain , Ming-Ta Li , Tatheer Hussain Mir , Kuang-Te Wang , Min-I Su , Pei-Kang Liu , Ming-Ju Tsai

Resampling algorithms are a useful approach to deal with imbalanced learning in multilabel scenarios. These methods have to deal with singularities in the multilabel data, such as the occurrence of frequent and infrequent labels in the same…

Machine Learning · Computer Science 2025-01-22 Antonio J. Rivera , Miguel A. Dávila , David Elizondo , María J. del Jesus , Francisco Charte

The disease coding task involves assigning a unique identifier from a controlled vocabulary to each disease mentioned in a clinical document. This task is relevant since it allows information extraction from unstructured data to perform,…

Computation and Language · Computer Science 2024-07-29 Fabián Villena , Matías Rojas , Felipe Arias , Jorge Pacheco , Paulina Vera , Jocelyn Dunstan

Intelligent personal digital assistants (IPDAs), a popular real-life application with spoken language understanding capabilities, can cover potentially thousands of overlapping domains for natural language understanding, and the task of…

Computation and Language · Computer Science 2018-04-24 Young-Bum Kim , Dongchan Kim , Joo-Kyung Kim , Ruhi Sarikaya

Generative retrieval represents a novel approach to information retrieval. It uses an encoder-decoder architecture to directly produce relevant document identifiers (docids) for queries. While this method offers benefits, current approaches…

Information Retrieval · Computer Science 2024-09-30 Yubao Tang , Ruqing Zhang , Jiafeng Guo , Maarten de Rijke , Wei Chen , Xueqi Cheng

Deep learning approaches exhibit promising performances on various text tasks. However, they are still struggling on medical text classification since samples are often extremely imbalanced and scarce. Different from existing mainstream…

Computation and Language · Computer Science 2023-11-29 Jiahuan Yan , Haojun Gao , Zhang Kai , Weize Liu , Danny Chen , Jian Wu , Jintai Chen

Developing advanced medical imaging retrieval systems is challenging due to the varying definitions of `similar images' across different medical contexts. This challenge is compounded by the lack of large-scale, high-quality medical imaging…

Computer Vision and Pattern Recognition · Computer Science 2025-07-15 Tengfei Zhang , Ziheng Zhao , Chaoyi Wu , Xiao Zhou , Ya Zhang , Yanfeng Wang , Weidi Xie

Unsupervised Domain Adaptation (UDA) methods for person Re-Identification (Re-ID) rely on target domain samples to model the marginal distribution of the data. To deal with the lack of target domain labels, UDA methods leverage information…

Computer Vision and Pattern Recognition · Computer Science 2021-01-06 Tiago de C. G. Pereira , Teofilo E. de Campos

Web-scale search systems typically tackle the scalability challenge with a two-step paradigm: retrieval and ranking. The retrieval step, also known as candidate selection, often involves extracting standardized entities, creating an…

Multiple Instance Learning is the predominant method for Whole Slide Image classification in digital pathology, enabling the use of slide-level labels to supervise model training. Although MIL eliminates the tedious fine-grained annotation…

Computer Vision and Pattern Recognition · Computer Science 2025-05-28 Chen Shu , Boyu Fu , Yiman Li , Ting Yin , Wenchuan Zhang , Jie Chen , Yuhao Yi , Hong Bu

Search engines often follow a two-phase paradigm where in the first stage (the retrieval stage) an initial set of documents is retrieved and in the second stage (the re-ranking stage) the documents are re-ranked to obtain the final result…

Information Retrieval · Computer Science 2020-10-06 Saar Kuzi , Mingyang Zhang , Cheng Li , Michael Bendersky , Marc Najork
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